Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq203 376 2e-99 seq303 102 7e-17 seq60 100 3e-16 seq245 96.9 3e-15 >seq203 Length=54532 Score = 376 bits (416), Expect = 2e-99 Identities = 1227/1889 (65%), Gaps = 40/1889 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCG--GTTTG-GTGCGAAGATAATACAT 22161 || |||||| || ||||| || | |||||| | | ||| ||||| | || ||||| Sbjct 6064 CTGGTCCACGGTGAACTGGATAGG---TGCGGCAGCAGCTTGCGTGCGCAAGTAGTACAT 6120 Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACT 22221 ||||||||| ||||| | |||||| | ||| || || || || | || || | Sbjct 6121 GCCCGTCTTGAGACCTAGCTTCCAGCCAGTAAAGTGCATGGAAGTGATCTTGCCCATGGT 6180 Query 22222 CGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281 || | ||||| | |||| || || ||| || || || || || || || || Sbjct 6181 GGGATCCTTCATGTGAATGTTGAGGGATTGGGACTGGTCAATGAAAGCACCACGGTCAGC 6240 Query 22282 GGCCATATTTATCAA-TGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 ||||| | | | ||| || || |||||||| || || ||||| || ||| Sbjct 6241 AGCCATCTGCACGACGTGT-CGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGA 6299 Query 22341 TCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398 | || ||| || ||| | || |||| | || ||||| | | ||||| ||| Sbjct 6300 TATCGGCCGGGAT--ATTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATACGATT 6357 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 || |||| ||| ||| | || ||| || | |||||||| || | || || Sbjct 6358 CTTCATCGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTGAGTAGCCAGGGATTGAC 6417 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 || || || || || | || ||| ||||| |||||||||||||| ||| | || ||||| Sbjct 6418 AACCTGGAATTCACCTGCCAGGACACGGCGCTGGTAAATGTTGGACGTGTAAGGCTCGAA 6477 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 | |||||||| ||||| ||||||| ||| ||||| || ||||| || || | ||| | Sbjct 6478 GCACTCATTGTTACCCAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAA 6537 Query 22579 CGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAG 22635 ||||| | | || |||| |||| | | ||| ||||| | ||| ||||| || Sbjct 6538 TGAGTTGCGAATCCCATGCTCCTTGA---TCTGCTCCTTGAGGCTATCCCACTCCCAGAG 6594 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 || || ||| |||| ||||||||| ||| | || | | ||| | | | |||| Sbjct 6595 GTCAGAAGGCTTCAC---GTCCCACATGTCGAACTGAAGGATGCC-CTCCGAGGCGGGAG 6650 Query 22696 -GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACG 22754 ||| | | | || |||| || || | | | ||| | |||| || | | Sbjct 6651 AGCCCTTGAAAGTGGCGTAGGGCCCCTGTTCCTTGGCCAATTCGAGAGAGGCAGTGAGGG 6710 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTT 22810 | | | ||| || ||||| || || | |||||| | || ||| || ||| Sbjct 6711 CAGCATGATAAATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCTTCAGGTGAC---- 6766 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 ||| | ||||| |||| | ||| ||||| || | |||||| ||||| | ||| || Sbjct 6767 TCGAATGGCATGCGCAAGGCAAGGAAAGCGTCAGCGAGACCCTGGACGCCAACACCAATA 6826 Query 22871 GGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCGA 22928 ||||||| | || || | ||| | |||| | | || || || ||| | Sbjct 6827 GGTCGGTGTCGCATGTTG--CTGTTTCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAA 6884 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | ||||||||| ||| | || | | ||| | | ||||||| Sbjct 6885 TGATTCTGTTCAGGTTACGAACAACGACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGT 6944 Query 22989 AAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 | ||| ||||| ||||||| | | || | ||||| | |||||||| | Sbjct 6945 AGCGTCCCTCGTTGTAGTCAACAAAGGCGGGCAGAGCCAGAGAGGCCAAGTTGCATACAG 7004 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | ||||| || || | |||||| | |||||| || || || ||| | || | Sbjct 7005 CGACCTCATCAGGGGCAGAGTACTCGATAATTTCCGTGCAGAGGTTGGAGCTGCGGATTG 7064 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | ||||| || |||| ||||| |||| || || | |||||||||||||||| | || Sbjct 7065 TTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCTTGTAGAGCATGAAAGGAT 7124 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 | ||||||||| ||| | || | ||| | ||| | |||| || ||| ||| Sbjct 7125 TACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAATG-GTC 7183 Query 23226 GCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 ||||| ||| ||| || ||| ||||| | || | || ||||| || | ||||| Sbjct 7184 GCACGACCCTTGCCCTCACGCTCATACTTCTCATAGAGAGCCTCAAACTCCTCGCCGTAG 7243 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 ||||| ||||||||||| ||| | || ||||| ||| |||| || ||||| Sbjct 7244 CAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCG 7303 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || || |||| |||||||| || ||||| ||||| ||| | || || || || || Sbjct 7304 ACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACT 7363 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 || || || ||| ||||||| |||||| | || || ||||| || || ||||| ||| Sbjct 7364 TCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGC 7423 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || | ||||| |||||| || || |||| ||| ||||| ||||| || || || | ||| Sbjct 7424 TCCAAGTAAATGGCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCA 7483 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 ||||||||| | || | ||||| || | || ||| ||||||| |||| ||| || Sbjct 7484 GTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCA 7543 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | || || | || |||| ||| || | || || || || || || || Sbjct 7544 ATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCAAGCCGATACCACCAGCCATCTTG 7603 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || ||||| ||||| || || ||||| |||||||| |||||||||||||| || | Sbjct 7604 GAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATG 7663 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 | || | ||| || || |||| || || || || | || ||| ||||| || Sbjct 7664 TCAACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGC 7723 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 ||| || |||||| | | ||||| |||| ||| || || | | | ||||| Sbjct 7724 GAGGCATGTGTAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATA 7783 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTG 23884 | ||||| ||||||| || || ||||| ||||||| ||| || | |||||| | Sbjct 7784 TTGTCTCCCCAGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATC 7843 Query 23885 ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 |||||| | ||||| |||||||| || | | || || || ||||| || | ||| Sbjct 7844 TTGCCGTTGAGTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAG 7903 Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||| | || | || ||||| || Sbjct 7904 TTGAAGTCTCTGTCATAGACAATGGCGGA 7932 >seq303 Length=27345 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||| |||| || || || |||||| |||| || || | || || | ||| Sbjct 11275 TCGTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCG 11334 Query 31263 A-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | |||| |||| ||| | | | ||||||||| | || ||||||||||||||||| Sbjct 11335 ACAACGTGAAAACCAAGATTCAAG-ATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTG 11393 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| || ||| ||||||| || | |||||| ||||| || || Sbjct 11394 ATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACAACATCCAGAAG 11453 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || |||||||| || || | || | ||||||| Sbjct 11454 GAGTCCACACTTCATCTTGTTCTCCGCCTTCGTGGCGGTA 11493 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| ||| ||||||||||||||| || || || || ||||| || ||||| | || || Sbjct 10967 GAAGCAATCATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTC 11026 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCC 31302 || | || |||| |||| | ||||| || || || ||||||||| || | || Sbjct 11027 GAGTCATCTGACACCATCGACAATGTCAAGACCAAG-ATTCAGGACAAGGAGGGGATCCC 11085 Query 31303 GCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG 31362 ||||| || |||||||| || || ||||| || ||| | || ||| || | Sbjct 11086 CCCCGATCAACAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGC 11145 Query 31363 CGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || || || ||||||||||| || || Sbjct 11146 AGACTACAACATTCAGAAGGAGTCTACTCTTCATCTTGTGCT 11187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || |||||| |||| || || |||| Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| || || || ||||||||| | || ||||| ||| Sbjct 11553 GACACTATAGACAATGTGAAAACGAAGATTCAAGATAAGGAAGGCATTCCTCCCGATCAG 11612 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || |||||||| || ||| | || || Sbjct 11613 CAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGA 11647 >seq60 Length=156840 Score = 100 bits (110), Expect = 3e-16 Identities = 202/296 (68%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || || || || ||||| | |||||| | || ||| Sbjct 140608 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACGGCCGAAGAGATCGATCTG 140549 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGA-GAGAAAT--TTTATT 57683 || || ||| || ||| ||| || || || || ||| ||||||| || || Sbjct 140548 TCAAAAGATTTGCACGACTGGAACAATCGTCTGAATGA---TGACGAGAAATACTTCATC 140492 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| ||||| || || ||||| || || || |||||||| ||||| || Sbjct 140491 TCCCACATACTGGCATTTTTTGCTGCTTCCGACGGCATCGTCAACGAGAACTTGGTTGAG 140432 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | || ||||| ||||| | ||||| | |||||||||||||| || | Sbjct 140431 CGCTTCAGCGGTGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATG 140372 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || |||| || || || | ||||| || ||| | ||||| Sbjct 140371 ATGGAGAACATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 140316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 331/512 (65%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG--GCCACGTTCGCCGAG 57971 |||||||||||| ||| | ||| ||||| || | | | ||| |||||| || Sbjct 140202 CAAGAAGGCAGAATGGGCTATCCGCTGGAT--TCAGGACAAAGAATCCAGCTTCGCCCAG 140145 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | | | || || || || || |||||||| ||||| || ||||| | || Sbjct 140144 CGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATC 140085 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| ||||||| || ||| |||||||||| || || || |||||| || || ||| Sbjct 140084 TTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCG 140025 Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151 || || ||||| | || || || ||||| ||| | || |||||||| ||| | | Sbjct 140024 CGTGATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC-TTG---AAGCA 139969 Query 58152 CCGACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATG 58206 |||| || | || ||| | ||||| || || || ||| | ||||| | | Sbjct 139968 CCGA-GCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGCAAG 139910 Query 58207 AGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAA 58266 ||||| | || || || | || || | || || ||||| |||||| Sbjct 139909 AGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTGGGCATGAATGCCACATTGATGAAGC 139850 Query 58267 AGTACATTGAGTTTGTTGCCGACAGACT----TTTGCTCGAACTGATTGGAGAGCGTCAT 58322 |||||||||||||||| ||||| | || |||||| | | |||| || Sbjct 139849 AGTACATTGAGTTTGTGGCCGATCGCCTGCTCGTTGCTCTTGGTAA--CGAGAAGGT--G 139794 Query 58323 TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAAC 58382 || || ||| ||||| ||||| || ||| | ||||| | | ||||||||||| Sbjct 139793 TATAAGACGGCCAATCCTTTTGACTTCATGGAGAACATCTCATTGGGCGGCAAGACAAAT 139734 Query 58383 TTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || || || || |||| | || ||||| || Sbjct 139733 TTCTTTGAGAAGCGAGTTGGTGAGTATCAGAA 139702 >seq245 Length=42083 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| |||| || || | Sbjct 31650 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCT 31709 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 31710 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 31769 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || |||||||| ||| | || || Sbjct 31770 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 31807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762566408960