Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq203 156 5e-33
seq60 114 2e-20
>seq203
Length=54532
Score = 156 bits (172), Expect = 5e-33
Identities = 560/867 (65%), Gaps = 14/867 (2%)
Strand=Plus/Plus
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
|| ||||| | || ||||||| | ||| || |||| | | || || ||||| ||
Sbjct 7259 GGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATGAAA 7318
Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
||||| |||||||||||||| | |||| ||| | | || ||| || || ||
Sbjct 7319 AGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCGTGG 7378
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
|||||| | ||| |||||| | | | ||| | ||||| || |||||||| |||||
Sbjct 7379 TTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCA 7438
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | ||||| || ||||| || ||||| || | ||||| || ||||| || ||||
Sbjct 7439 AATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAAACA 7498
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| | ||| ||||| | ||| || || | || ||||| || | || || ||| ||
Sbjct 7499 CGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTG 7558
Query 63522 GCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
|| |||||| | ||| | || || || || || ||||| || ||||| | ||||
Sbjct 7559 GCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGGCGC 7616
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| || | |||||||||||||||||| ||||| || || |||||| || || |
Sbjct 7617 AGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGA--- 7673
Query 63640 AGCTAGACATTTGGTGAC---GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696
||| |||| | |||| ||| || || || || || | || || || || || |
Sbjct 7674 AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCATGTG 7733
Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756
|||| ||| || | |||| ||| || || | || || |||| |
Sbjct 7734 TAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCC 7793
Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816
|| || || || |||||||| | |||||| || || | || ||||| ||| ||| |
Sbjct 7794 AGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGTTGA 7853
Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876
||| | | || || || ||||| || || ||||| || | ||| |||||||
Sbjct 7854 GTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTC 7913
Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA 63936
|| || | ||| | || | ||| | ||| | | ||| | || || ||
Sbjct 7914 TGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTTCATGACGCACTCGTATGTCT 7973
Query 63937 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC-C 63995
|||| || || || ||| | || || |||||||| || | ||||||| |
Sbjct 7974 CCTTTGAGATCATTGGCGAAGCACGGTCGTTCTTGGGATTAACGTAATGATATAAATCGC 8033
Query 63996 T-CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCT 64054
| || || | || || | || || || | |||||| || || || | ||| || |
Sbjct 8034 TGACAACAGCTGAC--CATTGCTTCTTGGTCTGCTTGTGCAGGTTGGAGACGGCAATACG 8091
Query 64055 GGCGGCTAGAATGGCATAATCCGGATG 64081
||| || || || |||||||| |||||
Sbjct 8092 GGCCGCAAGGATAGCATAATCGGGATG 8118
>seq60
Length=156840
Score = 114 bits (126), Expect = 2e-20
Identities = 291/441 (66%), Gaps = 10/441 (2%)
Strand=Plus/Plus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|| || || ||||| || || || || || ||||| || || || ||||||| || ||
Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
|||||||| ||||| ||||||| || || | || | || | || | |
Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTACCAAGAGCAACGAGC 139821
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
| | ||| || || || || || || ||||||| | |||||| || | ||
Sbjct 139822 AGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAGA 139881
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
| ||| | |||| |||| ||||| ||||| || |||| || |||| ||| |||||
Sbjct 139882 GCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAATC 139941
Query 33531 A-----ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATG 33585
||| | | | || | ||||||| | | | | || || ||| || |
Sbjct 139942 TGTTGGATC-ATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 139996
Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645
| || || ||||| ||||| || | ||||||||||| || || ||||| ||||
Sbjct 139997 CAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 140056
Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705
|||| | ||||||||| || ||||| || || ||||| || | ||| ||||| || |
Sbjct 140057 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 140116
Query 33706 CTTCTACTGCAGCAAAGGCAA 33726
|||| || |||||||| ||||
Sbjct 140117 CTTCCACAGCAGCAAAAGCAA 140137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629812183568640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |