Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq203 156 5e-33 seq60 114 2e-20 >seq203 Length=54532 Score = 156 bits (172), Expect = 5e-33 Identities = 560/867 (65%), Gaps = 14/867 (2%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || ||||| | || ||||||| | ||| || |||| | | || || ||||| || Sbjct 7259 GGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATGAAA 7318 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| |||||||||||||| | |||| ||| | | || ||| || || || Sbjct 7319 AGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCGTGG 7378 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| | ||| |||||| | | | ||| | ||||| || |||||||| ||||| Sbjct 7379 TTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCA 7438 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | ||||| || ||||| || ||||| || | ||||| || ||||| || |||| Sbjct 7439 AATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAAACA 7498 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| ||||| | ||| || || | || ||||| || | || || ||| || Sbjct 7499 CGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTG 7558 Query 63522 GCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 || |||||| | ||| | || || || || || ||||| || ||||| | |||| Sbjct 7559 GCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGGCGC 7616 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || | |||||||||||||||||| ||||| || || |||||| || || | Sbjct 7617 AGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGA--- 7673 Query 63640 AGCTAGACATTTGGTGAC---GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 ||| |||| | |||| ||| || || || || || | || || || || || | Sbjct 7674 AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCATGTG 7733 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| ||| || | |||| ||| || || | || || |||| | Sbjct 7734 TAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCC 7793 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 || || || || |||||||| | |||||| || || | || ||||| ||| ||| | Sbjct 7794 AGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGTTGA 7853 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 ||| | | || || || ||||| || || ||||| || | ||| ||||||| Sbjct 7854 GTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTC 7913 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA 63936 || || | ||| | || | ||| | ||| | | ||| | || || || Sbjct 7914 TGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTTCATGACGCACTCGTATGTCT 7973 Query 63937 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC-C 63995 |||| || || || ||| | || || |||||||| || | ||||||| | Sbjct 7974 CCTTTGAGATCATTGGCGAAGCACGGTCGTTCTTGGGATTAACGTAATGATATAAATCGC 8033 Query 63996 T-CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCT 64054 | || || | || || | || || || | |||||| || || || | ||| || | Sbjct 8034 TGACAACAGCTGAC--CATTGCTTCTTGGTCTGCTTGTGCAGGTTGGAGACGGCAATACG 8091 Query 64055 GGCGGCTAGAATGGCATAATCCGGATG 64081 ||| || || || |||||||| ||||| Sbjct 8092 GGCCGCAAGGATAGCATAATCGGGATG 8118 >seq60 Length=156840 Score = 114 bits (126), Expect = 2e-20 Identities = 291/441 (66%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || ||||| || || || || || ||||| || || || ||||||| || || Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| ||||| ||||||| || || | || | || | || | | Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTACCAAGAGCAACGAGC 139821 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | ||| || || || || || || ||||||| | |||||| || | || Sbjct 139822 AGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAGA 139881 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | ||| | |||| |||| ||||| ||||| || |||| || |||| ||| ||||| Sbjct 139882 GCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAATC 139941 Query 33531 A-----ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATG 33585 ||| | | | || | ||||||| | | | | || || ||| || | Sbjct 139942 TGTTGGATC-ATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 139996 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | || || ||||| ||||| || | ||||||||||| || || ||||| |||| Sbjct 139997 CAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 140056 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| | ||||||||| || ||||| || || ||||| || | ||| ||||| || | Sbjct 140057 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 140116 Query 33706 CTTCTACTGCAGCAAAGGCAA 33726 |||| || |||||||| |||| Sbjct 140117 CTTCCACAGCAGCAAAAGCAA 140137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812183568640