Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq203 159 5e-34 seq60 111 2e-19 >seq203 Length=54532 Score = 159 bits (176), Expect = 5e-34 Identities = 460/703 (65%), Gaps = 10/703 (1%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 || || ||||| | || ||||||| | ||| || |||| | | || || ||||| Sbjct 7256 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATG 7315 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || ||||| |||||||||||||| | |||||||| | | || ||| || || || Sbjct 7316 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCG 7375 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 |||||| | ||| |||||| | | | ||| ||||| || |||||||| ||| Sbjct 7376 TGGTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 7435 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || ||||| || | ||||| || ||||| || || Sbjct 7436 GCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAA 7495 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | | ||| ||||| | ||||||||| || || ||||| || | || || ||| Sbjct 7496 ACACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCA 7555 Query 66312 CTTGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | || |||||| | ||| | || || || || || ||||| || ||||| | | Sbjct 7556 GTGGCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 7613 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 |||| || | ||| ||||||||||| || || || || ||| |||||| || || | Sbjct 7614 CGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGA 7673 Query 66430 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 ||| |||| | |||| || || || || || || | || || || || | Sbjct 7674 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCAT 7730 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | ||||| ||| || | |||| ||| || || | || || |||| | Sbjct 7731 GTGTAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 7790 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 || || || || |||||||| | |||||| || || | || || |||||| || Sbjct 7791 CCCAGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGT 7850 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | | ||| | | || || || ||||| || || ||||| || | ||| |||| Sbjct 7851 TGAGTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGT 7910 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 ||| || || | ||| | |||| ||||| ||| | | ||| Sbjct 7911 CTCTGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTT 7953 >seq60 Length=156840 Score = 111 bits (122), Expect = 2e-19 Identities = 290/440 (66%), Gaps = 8/440 (2%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || || || ||||| || || || || || ||||| || || || | ||||| || || Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| || || |||||| ||||| | || | || | || | | Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTACCAAGAGCAACGAGC 139821 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| || ||||| || || || ||||||| | |||||| || | || Sbjct 139822 AGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAGA 139881 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | ||| | |||| |||| ||||| ||||| || || | ||| || ||||| ||||| Sbjct 139882 GCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAATC 139941 Query 36107 GAT---ATTA-CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 36162 | || | ||| || | ||||||| | | | | || || ||| || || Sbjct 139942 TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGGC 139997 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 || || ||| | ||||| || | |||||||||||||| || ||||| ||||| Sbjct 139998 AAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGG 140057 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| | ||||||||| || ||||| || || || ||||| | || |||||||| || Sbjct 140058 CATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACC 140117 Query 36283 TTCTACTGCCGCAAAGGCAA 36302 ||| || || ||||| |||| Sbjct 140118 TTCCACAGCAGCAAAAGCAA 140137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167139713920