Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq303 105 7e-18
>seq303
Length=27345
Score = 105 bits (116), Expect = 7e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| || || || |||||||| || || || | || ||||| || || ||||| || ||
Sbjct 11722 TGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCT 11663
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| ||| | || |||||||| || ||||| |||| ||||| ||||||||||||
Sbjct 11662 GCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGA 11603
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| |||||||| || || ||| | || ||||| | | || | ||||| | | |||
Sbjct 11602 GGAATGCCTTCCTTATC-TTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTC 11544
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||| | ||| | ||||| || || | || || ||||| || ||||||
Sbjct 11543 CACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATA 11492
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| |||||||| || |||||||| || || | |||| ||| || |||||
Sbjct 11178 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGC 11119
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| |||||| |||||||||| || |||||||| || || || || ||||| ||| | ||
Sbjct 11118 TTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCC-TGAATCTT 11060
Query 139682 TGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| || | | || | ||||| | | ||| ||||||| || | |||||||||||
Sbjct 11059 GGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 11000
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| ||||||||
Sbjct 10999 AAGGGTTTTGACGAAAATTTGCAT 10976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496059733849600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |