Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq303 105 7e-18 >seq303 Length=27345 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || |||||||| || || || | || ||||| || || ||||| || || Sbjct 11722 TGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCT 11663 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | ||| | || |||||||| || ||||| |||| ||||| |||||||||||| Sbjct 11662 GCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGA 11603 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTC 139713 || |||||||| || || ||| | || ||||| | | || | ||||| | | ||| Sbjct 11602 GGAATGCCTTCCTTATC-TTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTC 11544 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| | ||| | ||||| || || | || || ||||| || |||||| Sbjct 11543 CACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATA 11492 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| || |||||||| || || | |||| ||| || ||||| Sbjct 11178 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGC 11119 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||||||||| || |||||||| || || || || ||||| ||| | || Sbjct 11118 TTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCC-TGAATCTT 11060 Query 139682 TGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || || | | || | ||||| | | ||| ||||||| || | ||||||||||| Sbjct 11059 GGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 11000 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| |||||||| Sbjct 10999 AAGGGTTTTGACGAAAATTTGCAT 10976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059733849600