Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq60 87.8 2e-12 >seq60 Length=156840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/259 (68%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 14170 tttCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 |||| ||||| ||||| ||||| ||||| || || |||||||| | ||| || | Sbjct 140350 TTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGA 140409 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 ||| ||||| | || | || |||| || || || || || || || ||| | Sbjct 140410 CTTGGACTTCACCGCTGAAGCGCTCAACCAAGTTCTCGTTGACGATGCCGTCGGAAGCAG 140469 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCC 14346 |||||||||||| ||||| || ||||||| ||| |||| || | | || |||| Sbjct 140470 CAAAAAATGCCAGTATGTGGGAGATGAAGTATTTCTCGTCATCATTCAGACGATTGTTCC 140529 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 | ||| ||||| || || ||||| | || || | ||||| || ||| | || | Sbjct 140530 AGTCGTGCAAATCTTTTGACAGATCGATCTCTTCGGCCGTCCAGAAGGAAGCCTCGGCCT 140589 Query 14407 TTTTATACATTACCCATAT 14425 |||| |||||| ||| || Sbjct 140590 TTTTGTACATTTGCCAGAT 140608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723874339200