Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq203 156 6e-33 seq60 132 6e-26 >seq203 Length=54532 Score = 156 bits (172), Expect = 6e-33 Identities = 902/1423 (63%), Gaps = 42/1423 (3%) Strand=Plus/Plus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 ||| ||||||||| || || |||| ||| ||||| || | ||||| || || |||| Sbjct 6714 CATGATAAATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCTTCAGGTGACTCGAATG 6773 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 | ||| || || ||||| || | || || ||||||| ||| ||||||| || Sbjct 6774 GCATGCGCAAGGCAAGGAAAGCGTCAGCGAGACCCTGGACGCCAACACCAATAGGTCGGT 6833 Query 71558 GTCTCTTATTAGAAATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | | || | |||| | || ||||| || || | || | ||| || ||| | Sbjct 6834 GTCGCATGTT-GCTGTTTCGGGCCTCCTGGACGGGG-TAGTGGTTGACATCAATGATTCT 6891 Query 71616 ATTGAGATTTCTGACTATTACTT---TGACCACATCCTTTAGTTTGAGAAAATCAAATCT 71672 || || || | || | || | ||||| || | || || | || || | | Sbjct 6892 GTTCAGGTTACGAACAACGACCTGCGTGACC---TCGTGAAGCTTCTGGAAGTCGTAGCG 6948 Query 71673 CCCATC----TATT--ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTAC 71726 || || || | ||||| || || || | ||| |||| || || || || || Sbjct 6949 TCCCTCGTTGTAGTCAACAAAGGCGGGCAGAGCCAGAGAGGCCAAGTTGCATACAGCGAC 7008 Query 71727 CTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCC 71786 ||||| || | | || | |||||||| ||||| || || | ||| ||||| Sbjct 7009 CTCATCAGGGGCAGAGTACTCGATAATTTCCGTGCAGAGGTTGGAGCTGCGGATTGTTCC 7068 Query 71787 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACC 71846 || || | ||||| |||||| ||||||| |||||||| || || || || ||| |||| Sbjct 7069 CAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCTTGTAGAGCATGAAAGGATTACC 7128 Query 71847 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTT 71906 || || |||| | ||| | || | | ||||| | || | | | || || Sbjct 7129 CGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATGGTCGC 7185 Query 71907 GTATCTCTTT---TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGC 71963 | ||| || | || || | ||| | || ||||| || || | || Sbjct 7186 ACGACCCTTGCCCTCACGCTCATACTTCTCATAGAGAGCCTCAAACTCCTCGCCGTA-GC 7244 Query 71964 ATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT- 72021 | | | | || || ||||| || || ||||||| | ||| || || | || ||| Sbjct 7245 AGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGT--TCTTTTC 7302 Query 72022 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 || || ||||| || ||||| |||||||||||||| | |||| ||| | | || Sbjct 7303 GACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGAC 7362 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || |||||| | ||| |||||| | | | ||| | ||||| || Sbjct 7363 TTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGG 7422 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 |||||||| ||||| | | || || || ||||| || ||||| || | ||||| || Sbjct 7423 CTCCAAGTAAATGGCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGC 7482 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 ||||| || |||| | | ||| ||||| | ||||||||| | || ||||| || | Sbjct 7483 AGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGC 7542 Query 72261 GATATAGCTTCCACTGGCACGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 || || ||| |||| |||||| || ||| | || || || || || ||||| Sbjct 7543 AATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATC 7600 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || ||||| | ||||| || | ||| ||||||||||| || || || || ||| || Sbjct 7601 TTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTC 7660 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAG 72435 |||| || || | ||| |||| | |||| || || || || || || | Sbjct 7661 ATGTCAACGAGGA---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGT 7717 Query 72436 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 72495 || || || || || ||||| ||| |||| |||| ||| || || | || Sbjct 7718 GTGGGCGAGGCATGTGTAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGC 7777 Query 72496 TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || |||| | || || || || |||||||| | ||| || || || | || Sbjct 7778 TCAATATTGTCTCCCCAGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCG 7837 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 || |||||| || | ||| | | || || || ||||| || || ||||| || Sbjct 7838 ACAATCTTGCCGTTGAGTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTAC 7897 Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTA 72675 | ||| ||||||| || || | ||| | || | ||||| ||| | | ||| | Sbjct 7898 TGGTAGTTGAAGTCTCTGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTTCATG 7957 Query 72676 ACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 72735 || || || |||| || || || ||| | || || |||||||| Sbjct 7958 ACGCACTCGTATGTCTCCTTTGAGATCATTGGCGAAGCACGGTCGTTCTTGGGATTAACG 8017 Query 72736 TAGTTGAATAAATC-CT-CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 72793 || | ||||||| || || || | || || | || || || | |||||| || | Sbjct 8018 TAATGATATAAATCGCTGACAACAGCTGAC--CATTGCTTCTTGGTCTGCTTGTGCAGGT 8075 Query 72794 TTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | || ||||| || | ||| || || || |||||||| ||||| Sbjct 8076 TGGAGACGGCAATACGGGCCGCAAGGATAGCATAATCGGGATG 8118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 300/466 (64%), Gaps = 5/466 (1%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 || ||||| || ||||| || || | || || |||| ||| || | ||||||||||| Sbjct 6064 CTGGTCCACGGTGAACTGGATAGGTGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 6123 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 || || ||||| || |||| || ||| ||||| || | ||| | | || Sbjct 6124 CGTCTTGAGACCTAGCTTCCAGCCAGTAAAGTGCATGGAAGTGATCTTGCCCATGGTGGG 6183 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 ||| |||||||| || | || || || || ||||| || || | ||| ||||| Sbjct 6184 ATCCTTCATGTGAATGTTGAGGGATTGGGACTGGTCAATGAAAGCACCACGGTCAGCAGC 6243 Query 70971 CATTTTTATGATCGTCT-TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 71029 ||| | | || ||| | ||| | ||||||||||| |||||| || | || |||| Sbjct 6244 CATCTGCACGA-CGTGTCGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATAT 6302 Query 71030 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | | || | || | | |||||||| || || || ||||| || | ||| || | Sbjct 6303 CGGCCGGGATATTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATACGATTCTTCA 6362 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 || | ||| ||| | | ||| | | || | || || ||||| || || | Sbjct 6363 TCGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTGAGTAGCCAGGGATTGACAACCT 6422 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | ||||| || | || || | || |||||| || || || || || | ||| Sbjct 6423 GGAATTCACCTGCCAGGACACGGCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACT 6482 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 |||| || |||| ||| |||| || || || || ||||| || || Sbjct 6483 CATTGTTACCCAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGC 6528 >seq60 Length=156840 Score = 132 bits (146), Expect = 6e-26 Identities = 295/441 (67%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || ||||| || || || || || ||||| ||||| || ||||||| || || Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| ||||| ||||||| ||||| | || | || | || | | Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTACCAAGAGCAACGAGC 139821 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| || | || || || || ||||||| | |||||| || | || Sbjct 139822 AGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAGA 139881 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||| | |||| |||| ||||| ||||| || || | ||| || ||||| ||||| Sbjct 139882 GCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAATC 139941 Query 42014 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 42068 |||| | ||| || | ||||||| | | | | || || ||| || | Sbjct 139942 TGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 139996 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 | || || ||||| |||||||| | |||||||||||||| || ||||| |||| Sbjct 139997 CAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 140056 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188 |||| | ||||||||| || ||||| || ||||| ||||| | || ||||| || | Sbjct 140057 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 140116 Query 42189 CTTCTACTGCCGCAAAGGCAA 42209 |||| || || ||||| |||| Sbjct 140117 CTTCCACAGCAGCAAAAGCAA 140137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133428202880