Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq60 165 1e-35
seq203 158 2e-33
>seq60
Length=156840
Score = 165 bits (182), Expect = 1e-35
Identities = 205/274 (75%), Gaps = 14/274 (5%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||||||||| |||| ||||| ||||||| ||||||| ||||||||
Sbjct 140608 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACGGCCGAAGAGATCGATCTG 140549
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| || || || |||| ||| | | |||| ||| ||| ||| | | || || ||
Sbjct 140548 TCAAAAGATTTGCACGACTGGAACAATCGTCTGAATGATGACGAGAAATACTTCATCTCC 140489
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA-TCTGTTGACACG 125197
||||| |||| || ||||| | ||||| || ||||||||||| || | ||||| ||
Sbjct 140488 CACATACTGGCATTTTTTGCTGCTTCCGACGGCATCGTCAACGAGAACTTGGTTGA-GCG 140430
Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAAT 125251
||| || | ||| ||| | || |||| ||| ||||||||||||||||| ||
Sbjct 140429 CTTC-----AGCGGTGAAGTCCAAGTCCCTGAGG-CTCGTTGCTTTTACGGATTCCAGAT 140376
Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCT 125285
|||||| |||||| | |||||||||| ||||||
Sbjct 140375 CATGATGGAGAACATCCACTCGGAAACATACTCT 140342
>seq203
Length=54532
Score = 158 bits (174), Expect = 2e-33
Identities = 315/460 (68%), Gaps = 10/460 (2%)
Strand=Plus/Minus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
|||| ||| ||||| ||||| || || || || || | ||| | |||||||| ||||
Sbjct 7478 GATATGTTGACCAGGGTGGCAACAAGCGACCTGGTGCATTTGCCATTTACTTGGAGCCTT 7419
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||||| || || ||||| || | || |||| || ||| || ||||| | |
Sbjct 7418 GGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAGTCC 7359
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---A 97041
|||| | || || || ||| || ||| | || ||| | ||||||||||| ||| |
Sbjct 7358 GAGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGTGTCGAAA 7299
Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101
| |||||| | |||| || ||||||||| || | ||||| ||| | || ||||
Sbjct 7298 AGAACGGTG---ATTGGACTCTGATGTGCCCCAACGAATGCCCCGGCCTGGCTGACTGCT 7242
Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGA 97160
||||| ||||||||||| || | || |||| |||||| | |||| ||
Sbjct 7241 ACGGCGAGGAGTTTGAGGCTCTCTATGAGAAGTATGAGCGTGAGGGCAAGGGTCGTGCGA 7182
Query 97161 CGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219
| | ||| ||| | |||| || ||| | ||||| || || ||| ||||| || |
Sbjct 7181 CCATTCG-TGC-CCAGAAGCTCTGGTACTCCATCCTGGAAGCCCAGACCGAGACGGGTAA 7124
Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279
||| | ||| |||||||||||| || || | || ||||| || ||||||| ||
Sbjct 7123 TCCTTTCATGCTCTACAAGGATGCCTGTAACAGAAAGAGCAATCAGAAGAACTTGGGAAC 7064
Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||| ||||||| || |||||||||||| | ||||||
Sbjct 7063 AATCCGCAGCTCCAACCTCTGCACGGAAATTATCGAGTAC 7024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741052826890880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |