Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq60 96.9 3e-15 >seq60 Length=156840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 173/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || || || || |||||| || ||||| || ||||| || | |||||| | | Sbjct 140350 TTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGA 140409 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 | || ||||| | || | || | ||||| ||||| || || ||||| ||||| Sbjct 140410 CTTGGACTTCACCGCTGAAGCGCTCAACCAAGTTCTCGTTGACGATGCCGTCGGAAGCAG 140469 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTT----TTCTGACAACTTTAAC 13624 ||||||| || |||||||| || || | ||| |||| ||| ||| | | | | Sbjct 140470 CAAAAAATGCCAGTATGTGGGAGATGAAGTATTTCTCGTCATCATTCAGACGATTGTT-C 140528 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 || || | ||||||||||| | ||| | ||| || | ||||| || ||||| | ||| Sbjct 140529 CAGTCGTGCAAATCTTTTGACAGATCGATCTCTTCGGCCGTCCAGAAGGAAGCCTCGGCC 140588 Query 13685 TTCTTATACAT 13695 || || ||||| Sbjct 140589 TTTTTGTACAT 140599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978786212576