Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq245 98.7 8e-16
seq303 89.7 4e-13
>seq245
Length=42083
Score = 98.7 bits (108), Expect = 8e-16
Identities = 165/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || |||| | | ||| || || || ||||||||||| || |||||||| || ||
Sbjct 31880 ACCACCACGCAGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGC 31821
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || | ||||| |||||||| || | | || | |||||||| ||| ||
Sbjct 31820 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGG 31761
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676
| | ||||||||| || || ||||| | | || ||||| |||| |||||||
Sbjct 31760 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCC 31703
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733
||||| || || || || || ||||| || || || |||||||||||| || ||
Sbjct 31702 ACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 31646
>seq303
Length=27345
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || ||||| | ||||| ||||| | || |||||| || |||||||| || ||
Sbjct 11719 CCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGC- 11661
Query 48560 AATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| |||| | | ||||| |||||||| || || | || | |||||||||||| ||
Sbjct 11660 AAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGG 11601
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| || ||| ||| || | | |||| || || | ||||||
Sbjct 11600 AATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCAC 11541
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || ||||| || || ||||| || || || || ||||||||
Sbjct 11540 CTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/194 (70%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
|||||||||| |||||| || ||||||||||| || | || | || ||||||||
Sbjct 11468 ATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCTTCCAGCTG 11409
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| || |||| | ||||||||| || || | | |||||| || ||| ||
Sbjct 11408 CTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTT 11349
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
|| | | | || |||||||| | ||||||| ||||| || ||||| || |||
Sbjct 11348 GGTTTTCACGTTGTCG--ATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCG 11291
Query 48701 GTGAGAGTTTTCAC 48714
|| | ||| || ||
Sbjct 11290 GTCAAAGTCTTGAC 11277
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | |||||| || |||||| ||||||||||| || || | || |||||||
Sbjct 11185 CACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTC 11126
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| || | | || | |||||| ||||| || | | |||||||||
Sbjct 11125 AAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCCTG 11066
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||| || ||||| | | ||||| || | ||||| ||| | || ||||| ||
Sbjct 11065 AATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTT 11006
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || ||||| || ||||| |||||
Sbjct 11005 GCCGGTAAGGGTTTTGACGAAAATTTGCAT 10976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421247667808688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |