Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq303 116 3e-21
seq245 91.5 1e-13
>seq303
Length=27345
Score = 116 bits (128), Expect = 3e-21
Identities = 170/237 (72%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||||| ||| || | ||| ||||||||||| |||||||| || ||||| || | ||| |
Sbjct 11727 TTTACTGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGT 11668
Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890
| || || ||||| | |||||| ||||| ||||| | ||||| | | |||||
Sbjct 11667 AGTCTG-CA-AGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTG 11610
Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950
||| |||||||| ||||| || || | ||| || | || || | | | ||||||||
Sbjct 11609 ATCGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGA 11550
Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || | |||||||| ||||| || || || || || |||||||||||
Sbjct 11549 CGACTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
>seq245
Length=42083
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||||||||| ||| ||||| || | ||| || ||| || ||| | |
Sbjct 31867 CGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 31808
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || ||||||| | || ||||| || || ||||| || || |||
Sbjct 31807 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 31748
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || | ||||||| | ||| ||||| | || || || | |||||
Sbjct 31747 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATC 31688
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || || || || ||||||||
Sbjct 31687 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448287344695680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |