Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-35 seq321 156 7e-34 >seq1 Length=703770 Score = 161 bits (178), Expect = 2e-35 Identities = 201/270 (74%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || ||||||||||| ||||||||||| ||||| Sbjct 113575 GCCAAGCGTCACCGTAAGAT-TCTTCGCGACAACATCCAAGGCATCACCAAGCCCGCTAT 113633 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| || ||||||||||| ||||| ||| | |||| || |||| || || | Sbjct 113634 TCGACGTCTCGCCCGTCGTGGTGGTGTCAAACGTATTTCTGCTATGATCTACGAGGAAAC 113693 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 || |||| | |||| || ||| || ||| || | ||| ||| || || || || | Sbjct 113694 GCGCACTGTTCTTAAGACATTTCTCGAGGGCGTCATTCGTGACGCTGTTACA-TACACAG 113752 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || || ||||| ||||| ||| | ||| |||| || || || || ||||||| Sbjct 113753 AACACGCCAAGCGAAAGACAGTCACATCCCTTGATGTCGTATACGCCTTAAAGCGTCAAG 113812 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||||| | || || ||||| | |||| Sbjct 113813 GCCGTACACTATACGGCTTTGGTGGCTAAT 113842 >seq321 Length=25032 Score = 156 bits (172), Expect = 7e-34 Identities = 197/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || || || || || ||||| ||||| ||||| Sbjct 576 GCCAAGCGTCACCGTAAGAT-TCTTCGTGACAATATTCAGGGTATCACAAAGCCCGCTAT 634 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | |||| || |||| || |||| Sbjct 635 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGCGATGATCTACGAGGAGAC 694 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || |||| | || | ||||||| || || || | ||||| || ||| ||||| Sbjct 695 CCGCACTGTTCTCAAAACCTTCCTCGAGGGTGTCATTCGGGATGCCGTCACCTACACCGA 754 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||||||||| || | || | ||||| || |||| || ||||| Sbjct 755 ACACGCCAAGCGCAAGACTGTCACTTCTCTCGACGTTGTCTACGCTCTGAAGCGACAAGG 814 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || || ||||| Sbjct 815 CCGTACCCTGTACGGCTTCGGTGGTTAA 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074570956784