Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq203 158 2e-33 >seq203 Length=54532 Score = 158 bits (174), Expect = 2e-33 Identities = 562/870 (65%), Gaps = 14/870 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || || ||||| | || ||||||| | ||| || |||| | | || || ||||| Sbjct 7256 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATG 7315 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || ||||| |||||||||||||| | |||| ||| | | || ||| || || || Sbjct 7316 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCG 7375 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 |||||| | ||| |||||| | | | ||| | ||||| || |||||||| ||| Sbjct 7376 TGGTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 7435 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || ||||| || | ||||| || ||||| || || Sbjct 7436 GCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAA 7495 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| ||||| | ||| || || | || ||||| || | || || ||| Sbjct 7496 ACACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCA 7555 Query 63468 CTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 |||| |||||| | ||| | || || || || || ||||| || ||||| | | Sbjct 7556 GTGGCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 7613 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 |||| || | |||||||||||| || || ||||| || || |||||| || || | Sbjct 7614 CGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGA 7673 Query 63586 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 ||| |||| | |||| || || || || || || | || || || || | Sbjct 7674 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCAT 7730 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 | ||||| ||| || | |||| ||| || || | || || |||| | Sbjct 7731 GTGTAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 7790 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 || || || || |||||||| | |||||| || || | || || |||||| || Sbjct 7791 CCCAGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGT 7850 Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 | | ||| | | || || || ||||| || || ||||| || | ||| |||| Sbjct 7851 TGAGTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGT 7910 Query 63823 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGG 63882 ||| || || | ||| | |||| ||||| ||| | | ||| | || || | Sbjct 7911 CTCTGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTTCATGACGCACTCGTATG 7970 Query 63883 TGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 63942 | |||| || || || ||| | || || |||||||| || | |||||| Sbjct 7971 TCTCCTTTGAGATCATTGGCGAAGCACGGTCGTTCTTGGGATTAACGTAATGATATAAAT 8030 Query 63943 C-CT-CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 64000 | || || || | || || | || || || | |||||| || || || ||||| || Sbjct 8031 CGCTGACAACAGCTGAC--CATTGCTTCTTGGTCTGCTTGTGCAGGTTGGAGACGGCAAT 8088 Query 64001 TCTGGCGGCTAGAATGGCATAATCCGGATG 64030 | ||| || || || |||||||| ||||| Sbjct 8089 ACGGGCCGCAAGGATAGCATAATCGGGATG 8118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941842654080