Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq60 104 2e-17 seq303 82.4 7e-11 >seq60 Length=156840 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104593 TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATA 104652 || || || ||||| || ||||| ||||| |||||||| ||| || || || | ||| Sbjct 139708 TACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTCTCCATG 139767 Query 104653 AATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGA 104712 || || |||||||| |||||| | || |||| ||||| | | | ||| ||| Sbjct 139768 AAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTACCAAGAGCAACGAGCAGGCGA 139827 Query 104713 TCCGCCACAAATTCGATGTACTCGCACATAGAATGTG-CATTCATGCCCAGCATTGCGAC 104771 || |||||||| || ||||||| ||| |||||| ||||||||||||| | || Sbjct 139828 TCGGCCACAAACTCAATGTACTGCTTCATC-AATGTGGCATTCATGCCCAGTAGAGCACA 139886 Query 104772 GGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATG 104805 || ||||| | ||| | ||| |||| ||||||| Sbjct 139887 TGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATG 139920 >seq303 Length=27345 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || || | || |||||| | Sbjct 10976 ATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 11035 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || || || || ||||||||| Sbjct 11036 GACACCATCGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGGATCCCCCCCGATCAA 11095 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | || ||||| || || || | | | | | || || || ||| Sbjct 11096 CAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 11155 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || ||||| ||||| | ||| Sbjct 11156 ATTCAGAAGGAGTCTACTCTTCATCTTGTG 11185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429932394986640