Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq203 172 7e-38 seq60 120 4e-22 >seq203 Length=54532 Score = 172 bits (190), Expect = 7e-38 Identities = 466/708 (66%), Gaps = 10/708 (1%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || || ||||| | || ||||||| | ||| || |||| | | || || | Sbjct 7251 CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGACACGCT 7310 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || ||||| |||||||||||||| | |||| ||| | | || ||| || | Sbjct 7311 TCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACTTCTTCCT 7370 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || |||||| | ||| |||||| | | | ||| | ||||| || ||||||| Sbjct 7371 TACCGTGGTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGT 7430 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | ||||| || ||||| || ||||| || | ||||| || ||||| | Sbjct 7431 AAATGGCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGT 7490 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | |||| | | ||| ||||| | ||||||||| || || ||||| |||| || || Sbjct 7491 TGAAAACACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAG 7550 Query 63318 TTCCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| |||| |||||| | ||| | || || || || || ||||| || ||||| Sbjct 7551 AGCCAGTGGCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGAT 7608 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | ||||| || | ||| ||||||||||| || || || || ||| |||||| || Sbjct 7609 CATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAAC 7668 Query 63436 TAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 || | ||| |||| | |||| || || || || || || | || || || Sbjct 7669 GAGGA---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGA 7725 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 || || ||||| ||| || | |||| ||| || || | || || |||| Sbjct 7726 GGCATGTGTAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATT 7785 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 | || || || || |||||||| | |||||| || || | || || ||||| Sbjct 7786 GTCTCCCCAGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATCTT 7845 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672 | ||| | ||| | | || || || ||||| || || ||||| || | ||| Sbjct 7846 GCCGTTGAGTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTT 7905 Query 63673 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 ||||||| || || | ||| | |||| ||||| ||| | | ||| Sbjct 7906 GAAGTCTCTGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTT 7953 >seq60 Length=156840 Score = 120 bits (132), Expect = 4e-22 Identities = 292/441 (66%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || || ||||| || || || || || ||||| || || || | ||||| || || Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| || || ||||||| ||||| | || | || | || | | Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTACCAAGAGCAACGAGC 139821 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| || ||||| || || || ||||||| | |||||| || | || Sbjct 139822 AGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAGA 139881 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||| | |||| |||| ||||| ||||| || || | ||| || ||||| ||||| Sbjct 139882 GCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAATC 139941 Query 32610 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 32664 |||| | ||| || | ||||||| | | | | || || ||| || | Sbjct 139942 TGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 139996 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 | || || ||| | ||||| || | |||||||||||||| || ||||| |||| Sbjct 139997 CAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 140056 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 32784 |||| | ||||||||| || ||||| || || || ||||| | || |||||||| | Sbjct 140057 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 140116 Query 32785 CTTCTACTGCCGCAAAGGCAA 32805 |||| || || ||||| |||| Sbjct 140117 CTTCCACAGCAGCAAAAGCAA 140137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626550764800