Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq303 104 2e-17
>seq303
Length=27345
Score = 104 bits (114), Expect = 2e-17
Identities = 145/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| |||||||||||||| || ||||||| |||| |||||||| ||||| || |||||
Sbjct 11277 GTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGAC 11336
Query 25071 TCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129
|| || | || | ||| || || ||||| || || || ||||| ||||| | ||
Sbjct 11337 AACGTGAAAACCAAGATTCA-AGATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTGAT 11395
Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189
||| || || || || | ||||||| || || | | ||||||||| || || || ||
Sbjct 11396 TTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACAACATCCAGAAGGA 11455
Query 25190 ATCCACGCTACATTTAGTGCT 25210
||||| || ||| | || ||
Sbjct 11456 GTCCACACTTCATCTTGTTCT 11476
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| |||| ||||||||||||
Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| || || || || | || | ||| || || ||||| ||||| || ||
Sbjct 11553 GACACTAT--AGACAATGTGAAAACGAAGATTCA-AGATAAGGAAGGCATTCCTCCCGAT 11609
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| |||| || || || || || | || |||| || || | | || |||
Sbjct 11610 CAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTAC 11669
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| || || || || || || | ||||| |||
Sbjct 11670 AACATCCAGAAGGAGTCAACTTTGCATTTGGTG 11702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324366544720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |