Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq303 104 2e-17 >seq303 Length=27345 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || |||||||||||||| || ||||||| |||| |||||||| ||||| || ||||| Sbjct 11277 GTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGAC 11336 Query 25071 TCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 || || | || | ||| || || ||||| || || || ||||| ||||| | || Sbjct 11337 AACGTGAAAACCAAGATTCA-AGATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTGAT 11395 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 ||| || || || || | ||||||| || || | | ||||||||| || || || || Sbjct 11396 TTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACAACATCCAGAAGGA 11455 Query 25190 ATCCACGCTACATTTAGTGCT 25210 ||||| || ||| | || || Sbjct 11456 GTCCACACTTCATCTTGTTCT 11476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| |||| |||||||||||| Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || || | || | ||| || || ||||| ||||| || || Sbjct 11553 GACACTAT--AGACAATGTGAAAACGAAGATTCA-AGATAAGGAAGGCATTCCTCCCGAT 11609 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| || || || || || | || |||| || || | | || ||| Sbjct 11610 CAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTAC 11669 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || || || || || || | ||||| ||| Sbjct 11670 AACATCCAGAAGGAGTCAACTTTGCATTTGGTG 11702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324366544720