Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq245 179 7e-40
seq303 167 4e-36
seq1 107 4e-18
seq30 93.3 8e-14
>seq245
Length=42083
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || ||| ||| || |||||||| || ||||
Sbjct 31879 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 31820
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || ||||| || |||
Sbjct 31819 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGA 31760
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 31759 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 31700
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 31699 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31653
>seq303
Length=27345
Score = 167 bits (184), Expect = 4e-36
Identities = 178/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286
|||| | ||| || || | ||||| ||||| || | || ||||| || |||||||| |
Sbjct 11727 TTTACTGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGT 11668
Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346
| || | ||||||| ||||| || | |||||| || ||||| || || | || || |
Sbjct 11667 AGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGAT 11608
Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406
|||| |||||||||||||| ||||||||||| | || || || || ||||| | |
Sbjct 11607 CGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACG 11548
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || || || | ||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 11547 ACTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
Score = 158 bits (174), Expect = 2e-33
Identities = 167/220 (76%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | || || |||||||| || |||||||| ||||||| |
Sbjct 11491 CCGCCACGAAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCG 11432
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || ||||| || || | || |||||||| ||
Sbjct 11431 AGCGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGG 11372
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||| ||||||||||| | || ||| |||||||| || | || || ||
Sbjct 11371 ATGCCTTCCTTATCTTGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACC 11312
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454
|| | ||||||||| ||||| || | |||||||||| ||
Sbjct 11311 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGACTA 11272
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | || || || ||||| || || ||||| || || | |
Sbjct 11202 CCACCACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCG 11143
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || || || | ||||| ||||| ||
Sbjct 11142 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGG 11083
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | |||||| ||||||||||| | ||| || ||
Sbjct 11082 ATCCCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 11023
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||||| || || || ||||| |||||||| || ||||| ||
Sbjct 11022 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCATGAT 10973
>seq1
Length=703770
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| ||||| || || || | || || | ||||| || | |||||| || || || ||
Sbjct 263555 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 263496
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || ||||| || || ||||| ||||| || |||||||| | ||||| |||
Sbjct 263495 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCG 263436
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| | || || || |||||||||||||| || ||||| |||||||| || ||
Sbjct 263435 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAAA 263377
>seq30
Length=244860
Score = 93.3 bits (102), Expect = 8e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033
|||||| |||||||||| ||||||||| || ||| | || || || |||| | || |
Sbjct 238899 GGCATATCGCCACTGGAGGTACTGGTTCGGAGTCTTCTCAAGATGCATCTCCACGTGCTC 238840
Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093
| || ||||| || ||| | || |||| || || |||||| || ||| |
Sbjct 238839 TAGCGCGTGCTGCTTTATGTAGCCGATACGCAGATTAGGGTGCTTCTCAACCCTGCCG-G 238781
Query 225094 AGTCGGTTGTGCCT-CGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152
| || || || | |||||||| | |||||||||||||| |||||||||||| ||||
Sbjct 238780 TGGAGGGAATGACTTCACCGGTGAGTAGCTTGATGAGCGTAGACTTGCCCGCACCGTTGG 238721
Query 225153 GGCCAATCACGCCAATCCGGGATGA 225177
| ||||| | | | | || |||||
Sbjct 238720 GACCAATGATGGCCACACGAGATGA 238696
Score = 84.2 bits (92), Expect = 4e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574
||||| || | |||| | ||||||| ||| || ||||||||||| || || || | ||
Sbjct 238355 AGCCAAGCGATGTTGGTCACGTCCAGGTGATTAGTAGGTTCGTCAAGCAGAAGCACATCT 238296
Query 225575 GCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAG 225634
|| | |||| |||||||||| | || |||||||| ||||| || ||||| | |||
Sbjct 238295 GCTTTTTTGAGCATGGCGCGCGCTAAAGCAAGCTTCATCTTCCAACCACCGGATAAGGAA 238236
Query 225635 CCGA 225638
||||
Sbjct 238235 CCGA 238232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921614474047360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |