Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq245 179 7e-40 seq303 167 4e-36 seq1 107 4e-18 seq30 93.3 8e-14 >seq245 Length=42083 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||| ||| || |||||||| || |||| Sbjct 31879 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 31820 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || ||||| || ||| Sbjct 31819 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGA 31760 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 31759 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 31700 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 31699 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31653 >seq303 Length=27345 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||| || || | ||||| ||||| || | || ||||| || |||||||| | Sbjct 11727 TTTACTGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGT 11668 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || | ||||||| ||||| || | |||||| || ||||| || || | || || | Sbjct 11667 AGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGAT 11608 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 |||| |||||||||||||| ||||||||||| | || || || || ||||| | | Sbjct 11607 CGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACG 11548 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | ||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 11547 ACTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Score = 158 bits (174), Expect = 2e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || |||||||| || |||||||| ||||||| | Sbjct 11491 CCGCCACGAAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCG 11432 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || |||||||| || Sbjct 11431 AGCGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGG 11372 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||||||||| | || ||| |||||||| || | || || || Sbjct 11371 ATGCCTTCCTTATCTTGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACC 11312 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 || | ||||||||| ||||| || | |||||||||| || Sbjct 11311 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGACTA 11272 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || || ||||| || || ||||| || || | | Sbjct 11202 CCACCACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCG 11143 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | ||||| ||||| || Sbjct 11142 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGG 11083 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| ||||||||||| | ||| || || Sbjct 11082 ATCCCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 11023 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||||| || || || ||||| |||||||| || ||||| || Sbjct 11022 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCATGAT 10973 >seq1 Length=703770 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || ||||| || || || | || || | ||||| || | |||||| || || || || Sbjct 263555 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 263496 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || || ||||| ||||| || |||||||| | ||||| ||| Sbjct 263495 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCG 263436 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || |||||||||||||| || ||||| |||||||| || || Sbjct 263435 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAAA 263377 >seq30 Length=244860 Score = 93.3 bits (102), Expect = 8e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 |||||| |||||||||| ||||||||| || ||| | || || || |||| | || | Sbjct 238899 GGCATATCGCCACTGGAGGTACTGGTTCGGAGTCTTCTCAAGATGCATCTCCACGTGCTC 238840 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | || ||||| || ||| | || |||| || || |||||| || ||| | Sbjct 238839 TAGCGCGTGCTGCTTTATGTAGCCGATACGCAGATTAGGGTGCTTCTCAACCCTGCCG-G 238781 Query 225094 AGTCGGTTGTGCCT-CGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || || || | |||||||| | |||||||||||||| |||||||||||| |||| Sbjct 238780 TGGAGGGAATGACTTCACCGGTGAGTAGCTTGATGAGCGTAGACTTGCCCGCACCGTTGG 238721 Query 225153 GGCCAATCACGCCAATCCGGGATGA 225177 | ||||| | | | | || ||||| Sbjct 238720 GACCAATGATGGCCACACGAGATGA 238696 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574 ||||| || | |||| | ||||||| ||| || ||||||||||| || || || | || Sbjct 238355 AGCCAAGCGATGTTGGTCACGTCCAGGTGATTAGTAGGTTCGTCAAGCAGAAGCACATCT 238296 Query 225575 GCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAG 225634 || | |||| |||||||||| | || |||||||| ||||| || ||||| | ||| Sbjct 238295 GCTTTTTTGAGCATGGCGCGCGCTAAAGCAAGCTTCATCTTCCAACCACCGGATAAGGAA 238236 Query 225635 CCGA 225638 |||| Sbjct 238235 CCGA 238232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614474047360