Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq203 232 1e-55 seq60 104 4e-17 >seq203 Length=54532 Score = 232 bits (256), Expect = 1e-55 Identities = 883/1365 (65%), Gaps = 57/1365 (4%) Strand=Plus/Plus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| || || || | ||| || ||||||||||| | |||| || ||| Sbjct 6413 TTGACAACCTGGAATTCACCTGCCAGGACACGGCGCTGGTAAATGTTGGACGTGTAAGGC 6472 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| |||| ||||| ||||| | || || || |||||||| | | | Sbjct 6473 TCGAAGCACTCATTGTTACCCAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGC 6532 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 |||| ||| | | || ||| || ||| | |||| | ||| ||||| Sbjct 6533 AGCAATGAGTTGCGAATCCCATGCTCCTTGATCTGCTCCTTGAGGCTATCCCACTCCCAG 6592 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | | | || ||| | || ||| |||||||||| ||||| || | |||| | Sbjct 6593 AGGTCAGA-AGG-CTTCACGT-------CCCACATGTCGAACTGAAGGATGCCCTCCGAG 6643 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTC 244389 |||| ||||| | | || | |||||| || | || ||||| | | || Sbjct 6644 GCGGGAGAGCCCTTGAAAGTGGCGTAGGGCCCCTGTTCCTTGGCCAATTCGAGAGAGGCA 6703 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 || |||||| || | || |||||||| || ||| |||||| | || ||||| | Sbjct 6704 GT-GAGGGCAGCATGATAAATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCTT---- 6758 Query 244450 GCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 ||||||| | || |||| || | ||| |||| || || ||||| ||||| Sbjct 6759 -CAGGTGACTCGAATGGCATGCGCAAGGCAAGGAAAGCGTCAGCGAGACCCTGGACGCCA 6817 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | || || |||| ||||||| ||||| | ||| || | |||||||| |||| Sbjct 6818 ACACCAATAGGTCGGTGTCGCATGTTGCTGTTTCGGGCCTCCTGGACGGGGTAGTGGTTG 6877 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCT 244622 | || || | |||| ||||| || | | |||| ||| ||| ||| || Sbjct 6878 ACATCAATGATTCTGTTCAGGTTACGAACAACGACCTGCGT--GACCTCGTGAAGCTTCT 6935 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 | |||||||| ||| ||||| | | || | ||||| || || || | Sbjct 6936 GGAAGTCGTAG-CGTC-----CCTCGTTG-TAGTCA-----ACAAAGGCGGGCAGAGCCA 6983 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 ||||| |||||| || || ||||| || | | | ||||| || ||| || |||| Sbjct 6984 GAGAGGCCAAGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATTTCCGTGC 7043 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 ||||||| || ||| || |||| || || |||||| ||| ||| ||||| | Sbjct 7044 AGAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCAT 7103 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 |||||||||||||||| || || |||||| |||||| | |||| | || ||||| Sbjct 7104 CCTTGTAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGA 7163 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | | | || | ||| ||| |||||||||| ||| || || || | Sbjct 7164 GCTTCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCATAGAGAG 7223 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAG 244980 |||| ||||| ||| || || | ||||||||||| || | |||||||| || Sbjct 7224 CCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTG--GGGCACATCAG 7281 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 | |||| || ||| | | ||| | || |||||| || ||||| ||||| || || | Sbjct 7282 AGTCCAATCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAG 7341 Query 245041 GAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 ||| | || | | ||| | || ||| || |||||| | || || | || Sbjct 7342 GAATAAATCAC--GAGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAAC 7399 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTG 245158 ||||| || ||| ||||||| ||||||| ||| | || | || || || ||||||||| Sbjct 7400 TCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTGTTG 7459 Query 245159 CCTCCCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 || ||||||| || ||| ||| | || | |||||| | || || | || | | | Sbjct 7460 CCACCCTGGT-CAACAT-ATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACAC 7517 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 | || || |||||||||||| ||||| | ||| || | | | | | | ||| Sbjct 7518 CATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGC---GCGAATAC-GGTGG 7573 Query 245277 ACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 |||| ||| | || || || ||||||||| | ||||||| |||||| ||||| Sbjct 7574 ACATTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCA 7633 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 ||||| || ||||||||| |||||||| | || ||||| || |||||||| Sbjct 7634 TAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGCTGACAT 7693 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | || ||| | |||||| || ||||| ||| || |||||| Sbjct 7694 TGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCATGTGTAAAG 7738 >seq60 Length=156840 Score = 104 bits (114), Expect = 4e-17 Identities = 333/506 (66%), Gaps = 13/506 (3%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 |||||||| || ||||| || |||||| || || | | |||| | || | Sbjct 140201 AAGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGAATCCAGCTTCGCCCAGCGC 140142 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 |||| || ||| | || || || || || |||||| || || || || || |||||| Sbjct 140141 TTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTC 140082 Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 ||||| ||| || | | ||||||||| ||||||||||| |||||| | ||| | Sbjct 140081 TGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGT 140022 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAA 42883 || ||||| |||| | |||||||||||| | ||| ||| ||| | | ||| | | Sbjct 140021 GATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCACTTGAAGCACCGA 139965 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||| | ||| || | ||| || || || || || || |||||| | ||||| Sbjct 139964 GCCAGC-AAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGCAAGAGTT 139906 Query 42944 CCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAA--CCACGACCTCATGTGCAA 43000 || || || | |||| ||| | || | |||||||| |||| | ||| | Sbjct 139905 TCTGACTGAGGCTTTGCCATGTG-CTCTACTGGGCATGAATGCCAC--ATTGATGAAGCA 139849 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACA 43059 |||||| ||| || ||||| | || || || | ||| || | | || | Sbjct 139848 GTACATTGAGTTTGTGGCCGATCGCCTGCTCGTTGCTCTTGGTAACGAGAAG-GTGTATA 139790 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 | ||| | || || ||||| |||||||||||||| |||| |||||||| || || | Sbjct 139789 AGACGGCCAATCCTTTTGACTTCATGGAGAACATCTCATTGGGCGGCAAGACAAATTTCT 139730 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 | |||||||| || | || || ||| Sbjct 139729 TTGAGAAGCGAGTTGGTGAGTATCAG 139704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331078682880