Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq303 131 4e-25
seq245 118 3e-21
>seq303
Length=27345
Score = 131 bits (144), Expect = 4e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| || ||||||| ||| || || ||||| || || ||||||||||| || || |||
Sbjct 11476 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCT 11417
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| | || || || ||||| ||||||||||| || ||||| ||||| |||||
Sbjct 11416 TCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATCT 11357
Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441
|| || || | ||||||||| || || | ||| || || || ||||| ||||| |||
Sbjct 11356 TGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTC 11297
Query 288442 TTCCCGGTCAGAGTCTTGACGAATA 288466
|| ||||||| ||||||||||| ||
Sbjct 11296 TTTCCGGTCAAAGTCTTGACGACTA 11272
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| || || || || || || || | || ||||| ||||||
Sbjct 11683 TCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAG 11624
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| ||| || || ||||| ||||| || || |||| |||||| ||
Sbjct 11623 ATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTG 11564
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
||||||| || ||| || || ||||| ||||| ||||| || || || |||||||||
Sbjct 11563 TCTATAGTGTCAGACGACTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 11504
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 11503 AAGATCTGCAT 11493
Score = 118 bits (130), Expect = 3e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || ||||||| || || || || || || ||||| |||
Sbjct 11202 CCACCACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCG 11143
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || ||||| || |||||||||||||||||| |||
Sbjct 11142 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGG 11083
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || || || || || | || || || ||
Sbjct 11082 ATCCCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 11023
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| ||||| || || |||||||| || ||||| ||
Sbjct 11022 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCATGAT 10973
>seq245
Length=42083
Score = 118 bits (130), Expect = 3e-21
Identities = 147/200 (74%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
||||| || || ||||| || |||||||| || ||||| || || || | || || ||
Sbjct 31849 GTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 31790
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||| || ||||| || || ||| || || || || |||||||| || |
Sbjct 31789 GCAAAGATGAGTCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 31733
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| ||||| || || | ||| || || || ||||| |||||||||||||| || ||
Sbjct 31732 TTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGG 31673
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||||||||| ||||||||
Sbjct 31672 GTCTTGACGAAAATCTGCAT 31653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179644001346464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |