Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq303 114 1e-20
seq245 104 2e-17
>seq303
Length=27345
Score = 114 bits (126), Expect = 1e-20
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || ||||||||||| || ||||| | |||||||||| || |||||||||||
Sbjct 11719 CCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 11660
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||| || || || | |||| |||||||| || || |||||
Sbjct 11659 AGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGA 11600
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| || || ||| | || ||||| |||| || | ||||| | ||||||||
Sbjct 11599 ATGCCTTCCTTATC-TTGAATCTTCGTTTTCACATTG-TCTATAGTGTCAGACGACTCCA 11542
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || || || || || || || || ||||||||
Sbjct 11541 CCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/197 (72%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| |||||||||||||| | || || |||||| || || || || | |
Sbjct 11169 GACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCA 11110
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538
|||| ||||||||||| || || || || || || ||||| ||| | || || ||
Sbjct 11109 AAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTC-CTGAATCTTGGTCTTGAC 11051
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | |||||| | ||||| ||||| | || | || || || || || ||||
Sbjct 11050 ATTG-TCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTT 10992
Query 138599 TTACAAAAATCTGCATG 138615
| || ||||| ||||||
Sbjct 10991 TGACGAAAATTTGCATG 10975
>seq245
Length=42083
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| || || || |||||||| || || || | | |
Sbjct 31844 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 31785
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| |||||||| || || || || ||||| ||| || || | |
Sbjct 31784 GATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 31725
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||||| || | ||| || || || || || || ||
Sbjct 31724 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 31665
Query 138603 AAAAATCTGCAT 138614
|||||||||||
Sbjct 31664 GAAAATCTGCAT 31653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258132143360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |