Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq303 114 1e-20 seq245 104 2e-17 >seq303 Length=27345 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||||||||| || ||||| | |||||||||| || ||||||||||| Sbjct 11719 CCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 11660 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | |||| |||||||| || || ||||| Sbjct 11659 AGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGA 11600 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| | || ||||| |||| || | ||||| | |||||||| Sbjct 11599 ATGCCTTCCTTATC-TTGAATCTTCGTTTTCACATTG-TCTATAGTGTCAGACGACTCCA 11542 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || || || || || || |||||||| Sbjct 11541 CCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || |||||| || || || || | | Sbjct 11169 GACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCA 11110 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| ||||||||||| || || || || || || ||||| ||| | || || || Sbjct 11109 AAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTC-CTGAATCTTGGTCTTGAC 11051 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | ||||| ||||| | || | || || || || || |||| Sbjct 11050 ATTG-TCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTT 10992 Query 138599 TTACAAAAATCTGCATG 138615 | || ||||| |||||| Sbjct 10991 TGACGAAAATTTGCATG 10975 >seq245 Length=42083 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| || || || |||||||| || || || | | | Sbjct 31844 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 31785 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 31784 GATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 31725 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||||| || | ||| || || || || || || || Sbjct 31724 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 31665 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 31664 GAAAATCTGCAT 31653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258132143360