Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq60 104 4e-17
seq203 98.7 2e-15
>seq60
Length=156840
Score = 104 bits (114), Expect = 4e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975
||| | ||| |||||||| ||||| ||||| || || ||||| || |||||||| |
Sbjct 139986 CAGCAAGCAGGCAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAA 140045
Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035
| |||| || ||||| | |||||| || ||||| || || | ||||||||||||||
Sbjct 140046 GGTGAGACCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCT 140105
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095
|| || || || ||||| || ||||| || || | | || | || || | |
Sbjct 140106 GAAGAAAATACCTTCCACAGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTT 140165
Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGG 160143
||| || |||| | | |||||||| |||||| ||||| ||||| ||
Sbjct 140166 GTCCTGAATCCAGCGGATAGCCCATTCTGCCTTC-TTGCGAATGCAAGG 140213
>seq203
Length=54532
Score = 98.7 bits (108), Expect = 2e-15
Identities = 379/580 (65%), Gaps = 14/580 (2%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACAT 203895
|| |||||| |||||||| || | || | ||||| || ||| | | || ||||||||
Sbjct 6064 CTGGTCCACGGTGAACTGGATAG-GTGC--GGCAGCAGCTTGCGTGCGCAAGTAGTACAT 6120
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954
||| ||||| || || || ||| || ||| | ||||||||||| | |||| || |
Sbjct 6121 GCCCGTCTTGAGACCTAGCTTCCAGCCAGTA-AAGTGCATGGAAGTGATCTTGCCCATGG 6179
Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014
|||| || |||||||||||| || || ||| ||||| ||||||| | || || |
Sbjct 6180 TGGGATCCTTCATGTGAATGTTGAGGGATTGGGACTGGTCAATGAAAGCACCACGGTCAG 6239
Query 204015 CGGCCATATTGATAATG-GTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073
| ||||| | | | | ||| | || ||||| ||||| || || ||| | | || ||
Sbjct 6240 CAGCCATCTGCACGACGTGTCGT-TGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTG 6298
Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132
| | || | || | | || ||| || || ||||| ||||| || | | |
Sbjct 6299 ATATCGGCCGGGATAT-TGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATACGATT 6357
Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192
| || || | || ||| | ||||| || || || | || ||| ||||
Sbjct 6358 CTTCATCGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTGAGTAGCCAGGGATTGAC 6417
Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252
| ||| || || || | ||| || | || | | | |||| ||| | || |||||
Sbjct 6418 AACCTGGAATTCACCTGCCAGGACACGGCGCTGGTAAATGTTGGACGTGTAAGGCTCGAA 6477
Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312
||| ||||| || | |||||||| ||| ||||| |||||||| || || ||||
Sbjct 6478 GCACTCATTGTTACCCAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAA 6537
Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCG 204371
|||||||| | || | | | || |||| ||| || ||| || |
Sbjct 6538 TGAGTTGCGAATCCCATGCTCCTTGA-TCTGCTCCTTGAGGCTATCCCACTCCCAGAGGT 6596
Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411
|| || |||||| |||||||||||||||||| ||||||
Sbjct 6597 CAGAAGGCTTCACGTCCCACATGTCGAACTGAAGGATGCC 6636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795148361665280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |