Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq60 104 4e-17 seq203 98.7 2e-15 >seq60 Length=156840 Score = 104 bits (114), Expect = 4e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| | ||| |||||||| ||||| ||||| || || ||||| || |||||||| | Sbjct 139986 CAGCAAGCAGGCAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAA 140045 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | |||| || ||||| | |||||| || ||||| || || | |||||||||||||| Sbjct 140046 GGTGAGACCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCT 140105 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095 || || || || ||||| || ||||| || || | | || | || || | | Sbjct 140106 GAAGAAAATACCTTCCACAGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTT 140165 Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGG 160143 ||| || |||| | | |||||||| |||||| ||||| ||||| || Sbjct 140166 GTCCTGAATCCAGCGGATAGCCCATTCTGCCTTC-TTGCGAATGCAAGG 140213 >seq203 Length=54532 Score = 98.7 bits (108), Expect = 2e-15 Identities = 379/580 (65%), Gaps = 14/580 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACAT 203895 || |||||| |||||||| || | || | ||||| || ||| | | || |||||||| Sbjct 6064 CTGGTCCACGGTGAACTGGATAG-GTGC--GGCAGCAGCTTGCGTGCGCAAGTAGTACAT 6120 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954 ||| ||||| || || || ||| || ||| | ||||||||||| | |||| || | Sbjct 6121 GCCCGTCTTGAGACCTAGCTTCCAGCCAGTA-AAGTGCATGGAAGTGATCTTGCCCATGG 6179 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 |||| || |||||||||||| || || ||| ||||| ||||||| | || || | Sbjct 6180 TGGGATCCTTCATGTGAATGTTGAGGGATTGGGACTGGTCAATGAAAGCACCACGGTCAG 6239 Query 204015 CGGCCATATTGATAATG-GTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 | ||||| | | | | ||| | || ||||| ||||| || || ||| | | || || Sbjct 6240 CAGCCATCTGCACGACGTGTCGT-TGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTG 6298 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | | || | || | | || ||| || || ||||| ||||| || | | | Sbjct 6299 ATATCGGCCGGGATAT-TGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATACGATT 6357 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | || || | || ||| | ||||| || || || | || ||| |||| Sbjct 6358 CTTCATCGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTGAGTAGCCAGGGATTGAC 6417 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 | ||| || || || | ||| || | || | | | |||| ||| | || ||||| Sbjct 6418 AACCTGGAATTCACCTGCCAGGACACGGCGCTGGTAAATGTTGGACGTGTAAGGCTCGAA 6477 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 ||| ||||| || | |||||||| ||| ||||| |||||||| || || |||| Sbjct 6478 GCACTCATTGTTACCCAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAA 6537 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCG 204371 |||||||| | || | | | || |||| ||| || ||| || | Sbjct 6538 TGAGTTGCGAATCCCATGCTCCTTGA-TCTGCTCCTTGAGGCTATCCCACTCCCAGAGGT 6596 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || || |||||| |||||||||||||||||| |||||| Sbjct 6597 CAGAAGGCTTCACGTCCCACATGTCGAACTGAAGGATGCC 6636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148361665280