Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq245 134 2e-26
seq303 114 1e-20
seq1 102 9e-17
>seq245
Length=42083
Score = 134 bits (148), Expect = 2e-26
Identities = 164/221 (74%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| |||| || |||||||| ||||| |||||||||| || ||||| |
Sbjct 31867 CGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 31808
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||| || || || | ||||||||||| | || | || |||||||
Sbjct 31807 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 31748
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| ||||| ||| | | | |||||| || ||||| || | |||||
Sbjct 31747 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 31689
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|| || ||||| || || || || || || ||||| ||||
Sbjct 31688 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 31648
>seq303
Length=27345
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435
||||||||||||| |||||| || |||||| ||||| |||||||| | || || ||
Sbjct 11710 AAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGG 11651
Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495
| || ||||||||||| || ||||| || | |||||||| |||| || | || |||
Sbjct 11650 CCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCC 11591
Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555
|| || |||||| | || | | | | ||||| ||| ||||| || | |||
Sbjct 11590 TTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTG 11531
Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || || || || || || || ||||| |||||
Sbjct 11530 ATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
>seq1
Length=703770
Score = 102 bits (112), Expect = 9e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| |||||||||||||| | || || || | || || ||||||||||| || || |
Sbjct 263557 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 263498
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | || | || |||||| ||| ||||| |||| |
Sbjct 263497 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGT 263438
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || |||| |||||||| || |||||||| || || ||||
Sbjct 263437 CGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAA 263378
Query 46584 A 46584
|
Sbjct 263377 A 263377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565233538949760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |