Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq88 143 2e-28 seq5 107 1e-17 >seq88 Length=118767 Score = 143 bits (158), Expect = 2e-28 Identities = 228/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040 ||| ||||||||||| ||| ||| | ||||||| |||||||||||||| || || Sbjct 108883 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACAAGGCGATTATCAAAATCCTCGCC 108824 Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100 ||||| | || | || | || || | |||| ||| | || ||||||| || ||| Sbjct 108823 ACCCAAATGGGTGTCACCAGCTGTGGCCTTGACTTCGAAGATGCCGTCTTCAATAGTCAA 108764 Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 ||||| ||||||| || || || || | ||||| || | ||||| || || Sbjct 108763 AAGAGATACATCAAAAGTACCTCCGCCAAGGTCAAAGATCAACACATTGCGCTCGCCTTC 108704 Query 518161 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220 || || ||||| || ||||||| ||| || |||||||| ||||| || || | ||| Sbjct 108703 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCGGCAGTTGGCTCATTGATGATACGCAA 108644 Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 | || | || ||||| | || || || || || ||||| | || || |||||||| Sbjct 108643 GATGTTGATTCCGGCAATAGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 108584 Query 518281 ATATGCAGGAACAGTAATAACGGCATC 518307 ||||| |||||||| | || ||||| Sbjct 108583 GTATGCTGGAACAGTGACCACAGCATC 108557 Score = 129 bits (142), Expect = 4e-24 Identities = 445/682 (65%), Gaps = 19/682 (3%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || | ||||||||||||||| | ||| || || |||||||| || || || || | Sbjct 109667 ACGTTCATAATACCATTGGCATCAAGATCGAAAGTAACTTCAATCTGGGGAACACCGCGA 109608 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--TTATTATCTTTAGTGA 517382 | || || || || || | | ||| | ||| |||| || ||||| |||||| Sbjct 109607 GGCGCTGGAGGAATGCCAGTGAGTTCGAATTTACCC--ATTAAGTTGTTATCCTTAGTGC 109550 Query 517383 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 517442 | || ||||||||| | | ||||||| ||| ||| || ||||||||| | || | Sbjct 109549 GCTGGCGCTCACCCTCGTACACTTGGATAAGAACGCCAGGCTGGTTATCTGAAAACGTCG 109490 Query 517443 TAAAT-ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501 ||| ||| | || ||| ||||| |||||||||| | ||| | || ||||| Sbjct 109489 AGAATGTCTCAGTCTTCTTT-GTTGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATC 109431 Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-- 517559 |||||||| || ||||| | || || || ||||| | || |||| || | ||| | Sbjct 109430 ATACCACCAGCAGTTTCAATGCCTAGTGACAGAGGTGCAACGTCAAGGAGCAAAATCTCG 109371 Query 517560 TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 || | | || || || | ||| || ||||| || || | |||||| |||| | Sbjct 109370 TTAGTTGACTTGGATGTGGTATCTCCAGACAGGATAGCGGCCTGTACAGCAGCGCCATTT 109311 Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 517678 || ||||| || |||||||| | | | | | |||| |||||||| ||| Sbjct 109310 GCTACAGCCTCGTCAGGATTGATGCTCTTGCTAGGCGTTTTGCCATTGAAGTAATCGCTG 109251 Query 517679 AGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 517737 | || | ||| || || ||||||| || ||||| |||| ||||| || || || Sbjct 109250 ATGAGAT-TCTGAACACGCGGGATACGAGTAGAACCTCCCACTAGAACAATATCGTGGAC 109192 Query 517738 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCT 517797 || || || || ||||| | || | | || || || || | ||| | || Sbjct 109191 TTGAGACTTGTCGAGTTTAGCGTCAGAAAGGACGCGGTCCACCGGCTGGAGAGTGGATCG 109132 Query 517798 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 517857 |||| ||| ||||||||||| || || | |||| || || || ||||| Sbjct 109131 GAACAGATCTTGGCAAAGTTCTTCAAAACGGGCACGGGTAATAGGTGCAGAGTAGTCAAT 109072 Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT----CGAAGAAGATAGTGCAC 517913 || || ||||| || || | || ||| ||||| || | || || || |||| Sbjct 109071 GCCCTCAAACAATGAGTCGA--TC--TCGACGTTTGTGTTATGCTGAGCGGAGAGGGCAC 109016 Query 517914 GTTTAGCACGTTCACATGCTGT 517935 | || || |||||||||||||| Sbjct 109015 GCTTCGCTCGTTCACATGCTGT 108994 >seq5 Length=479718 Score = 107 bits (118), Expect = 1e-17 Identities = 251/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || ||||||||||||||||||| ||||| | || ||||||||||| || || | Sbjct 56143 ACTTTGAGAATACCATTGGCATCCAGCTCAAACGACACCTCAATTTGAGGAACACCACGA 56202 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 ||||||| ||||| || | | ||| |||| || || |||||||| || |||| Sbjct 56203 GGAGCAGGGGGGATGCCCGTGAGCTCAAACTTTCCAAGGTTGTTATTATCCTTGGTGAGA 56262 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 |||||| |||||| | | |||||| || |||| || ||||| | | || | Sbjct 56263 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 56322 Query 517445 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || | ||||| | || | ||| || | ||||| | ||| | |||||||| | Sbjct 56323 AAGA-TCTGGCTCTTGCGAGTAGGGATGGGAGTGTTGCGGGGAATCAACTTGGTCATGAC 56381 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563 ||||| | || || | |||||||| ||||| ||||||| | || || || | | Sbjct 56382 TCCACCAGTGGTCTCAATACCAAGAGTCAGAGGGTTGACATCCATGAGAACGATCTCCT- 56440 Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 ||| | | | || ||||| | | || || | ||||||||| | ||||| Sbjct 56441 CAGT-----ACCCTCCTCGCCGGAAAGAACACCAGCCTGGACGGCAGCACCAAAGGCAAC 56495 Query 517624 AGCTTCATCAGGATT 517638 ||| ||||| ||||| Sbjct 56496 AGCCTCATCGGGATT 56510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780788259173728