Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq88 143 2e-28
seq5 107 1e-17
>seq88
Length=118767
Score = 143 bits (158), Expect = 2e-28
Identities = 228/327 (70%), Gaps = 0/327 (0%)
Strand=Plus/Minus
Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040
||| ||||||||||| ||| ||| | ||||||| |||||||||||||| || ||
Sbjct 108883 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACAAGGCGATTATCAAAATCCTCGCC 108824
Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100
||||| | || | || | || || | |||| ||| | || ||||||| || |||
Sbjct 108823 ACCCAAATGGGTGTCACCAGCTGTGGCCTTGACTTCGAAGATGCCGTCTTCAATAGTCAA 108764
Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160
||||| ||||||| || || || || | ||||| || | ||||| || ||
Sbjct 108763 AAGAGATACATCAAAAGTACCTCCGCCAAGGTCAAAGATCAACACATTGCGCTCGCCTTC 108704
Query 518161 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220
|| || ||||| || ||||||| ||| || |||||||| ||||| || || | |||
Sbjct 108703 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCGGCAGTTGGCTCATTGATGATACGCAA 108644
Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280
| || | || ||||| | || || || || || ||||| | || || ||||||||
Sbjct 108643 GATGTTGATTCCGGCAATAGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 108584
Query 518281 ATATGCAGGAACAGTAATAACGGCATC 518307
||||| |||||||| | || |||||
Sbjct 108583 GTATGCTGGAACAGTGACCACAGCATC 108557
Score = 129 bits (142), Expect = 4e-24
Identities = 445/682 (65%), Gaps = 19/682 (3%)
Strand=Plus/Minus
Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324
|| || | ||||||||||||||| | ||| || || |||||||| || || || || |
Sbjct 109667 ACGTTCATAATACCATTGGCATCAAGATCGAAAGTAACTTCAATCTGGGGAACACCGCGA 109608
Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--TTATTATCTTTAGTGA 517382
| || || || || || | | ||| | ||| |||| || ||||| ||||||
Sbjct 109607 GGCGCTGGAGGAATGCCAGTGAGTTCGAATTTACCC--ATTAAGTTGTTATCCTTAGTGC 109550
Query 517383 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 517442
| || ||||||||| | | ||||||| ||| ||| || ||||||||| | || |
Sbjct 109549 GCTGGCGCTCACCCTCGTACACTTGGATAAGAACGCCAGGCTGGTTATCTGAAAACGTCG 109490
Query 517443 TAAAT-ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501
||| ||| | || ||| ||||| |||||||||| | ||| | || |||||
Sbjct 109489 AGAATGTCTCAGTCTTCTTT-GTTGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATC 109431
Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-- 517559
|||||||| || ||||| | || || || ||||| | || |||| || | ||| |
Sbjct 109430 ATACCACCAGCAGTTTCAATGCCTAGTGACAGAGGTGCAACGTCAAGGAGCAAAATCTCG 109371
Query 517560 TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618
|| | | || || || | ||| || ||||| || || | |||||| |||| |
Sbjct 109370 TTAGTTGACTTGGATGTGGTATCTCCAGACAGGATAGCGGCCTGTACAGCAGCGCCATTT 109311
Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 517678
|| ||||| || |||||||| | | | | | |||| |||||||| |||
Sbjct 109310 GCTACAGCCTCGTCAGGATTGATGCTCTTGCTAGGCGTTTTGCCATTGAAGTAATCGCTG 109251
Query 517679 AGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 517737
| || | ||| || || ||||||| || ||||| |||| ||||| || || ||
Sbjct 109250 ATGAGAT-TCTGAACACGCGGGATACGAGTAGAACCTCCCACTAGAACAATATCGTGGAC 109192
Query 517738 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCT 517797
|| || || || ||||| | || | | || || || || | ||| | ||
Sbjct 109191 TTGAGACTTGTCGAGTTTAGCGTCAGAAAGGACGCGGTCCACCGGCTGGAGAGTGGATCG 109132
Query 517798 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 517857
|||| ||| ||||||||||| || || | |||| || || || |||||
Sbjct 109131 GAACAGATCTTGGCAAAGTTCTTCAAAACGGGCACGGGTAATAGGTGCAGAGTAGTCAAT 109072
Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT----CGAAGAAGATAGTGCAC 517913
|| || ||||| || || | || ||| ||||| || | || || || ||||
Sbjct 109071 GCCCTCAAACAATGAGTCGA--TC--TCGACGTTTGTGTTATGCTGAGCGGAGAGGGCAC 109016
Query 517914 GTTTAGCACGTTCACATGCTGT 517935
| || || ||||||||||||||
Sbjct 109015 GCTTCGCTCGTTCACATGCTGT 108994
>seq5
Length=479718
Score = 107 bits (118), Expect = 1e-17
Identities = 251/375 (67%), Gaps = 8/375 (2%)
Strand=Plus/Plus
Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324
|| || ||||||||||||||||||| ||||| | || ||||||||||| || || |
Sbjct 56143 ACTTTGAGAATACCATTGGCATCCAGCTCAAACGACACCTCAATTTGAGGAACACCACGA 56202
Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384
||||||| ||||| || | | ||| |||| || || |||||||| || ||||
Sbjct 56203 GGAGCAGGGGGGATGCCCGTGAGCTCAAACTTTCCAAGGTTGTTATTATCCTTGGTGAGA 56262
Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444
|||||| |||||| | | |||||| || |||| || ||||| | | || |
Sbjct 56263 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 56322
Query 517445 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503
|| | ||||| | || | ||| || | ||||| | ||| | |||||||| |
Sbjct 56323 AAGA-TCTGGCTCTTGCGAGTAGGGATGGGAGTGTTGCGGGGAATCAACTTGGTCATGAC 56381
Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563
||||| | || || | |||||||| ||||| ||||||| | || || || | |
Sbjct 56382 TCCACCAGTGGTCTCAATACCAAGAGTCAGAGGGTTGACATCCATGAGAACGATCTCCT- 56440
Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623
||| | | | || ||||| | | || || | ||||||||| | |||||
Sbjct 56441 CAGT-----ACCCTCCTCGCCGGAAAGAACACCAGCCTGGACGGCAGCACCAAAGGCAAC 56495
Query 517624 AGCTTCATCAGGATT 517638
||| ||||| |||||
Sbjct 56496 AGCCTCATCGGGATT 56510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780788259173728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |