Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq203 125 8e-24 >seq203 Length=54532 Score = 125 bits (138), Expect = 8e-24 Identities = 441/688 (64%), Gaps = 4/688 (1%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || | ||| || | || |||||||| ||||||| || || || | || ||| Sbjct 6977 AGAGCCAGAGAGGCCAAGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATT 7036 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 || | || || || | ||| || ||||| || | ||||| | ||||| Sbjct 7037 TCCGTGCAGAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTA 7096 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 || || |||||||| ||||| ||||| | || || || |||| | ||| | ||| || Sbjct 7097 CAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAG 7156 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | || || || || | | | || ||| | || || || | Sbjct 7157 TACCAGAGCTTCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCA 7216 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 || | |||||| || || || || | | | | || || ||||| || || ||| Sbjct 7217 TAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 7276 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| | |||||| | | |||| || | |||| || | ||| || ||||||||| Sbjct 7277 ATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGA 7336 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || | |||||||| | || || | |||||| || || ||| || | ||||| Sbjct 7337 GCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGG 7396 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | | ||| || ||||| || || || || || || | | |||| ||||| || Sbjct 7397 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTG 7456 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || || || || || | |||||||||||| ||||| |||| | | ||| || | | | Sbjct 7457 TTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACA 7516 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACTAA 48474 ||||| || | || ||||| || | ||| ||| ||| | || | ||| | | Sbjct 7517 CCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACA 7576 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 || || || |||||||| ||||| || || || | || || || || || |||| Sbjct 7577 TTCAA--GCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCAT 7634 Query 48535 AAATTCCTTCTATACTATCATCTATCAT 48562 | || ||||| || || || || |||| Sbjct 7635 AGATGCCTTCGATGCTGTCCTCCTTCAT 7662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103965864320