Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq203 125 8e-24
>seq203
Length=54532
Score = 125 bits (138), Expect = 8e-24
Identities = 441/688 (64%), Gaps = 4/688 (1%)
Strand=Plus/Plus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || | ||| || | || |||||||| ||||||| || || || | || |||
Sbjct 6977 AGAGCCAGAGAGGCCAAGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATT 7036
Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996
|| | || || || | ||| || ||||| || | ||||| | |||||
Sbjct 7037 TCCGTGCAGAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTA 7096
Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056
|| || |||||||| ||||| ||||| | || || || |||| | ||| | ||| ||
Sbjct 7097 CAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAG 7156
Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116
| ||| | || || || || | | | || ||| | || || || |
Sbjct 7157 TACCAGAGCTTCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCA 7216
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
|| | |||||| || || || || | | | | || || ||||| || || |||
Sbjct 7217 TAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 7276
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
|||| | |||||| | | |||| || | |||| || | ||| || |||||||||
Sbjct 7277 ATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGA 7336
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| | |||||||| | || || | |||||| || || ||| || | |||||
Sbjct 7337 GCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGG 7396
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356
|| || | | ||| || ||||| || || || || || || | | |||| ||||| ||
Sbjct 7397 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTG 7456
Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416
|| || || || || | |||||||||||| ||||| |||| | | ||| || | | |
Sbjct 7457 TTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACA 7516
Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACTAA 48474
||||| || | || ||||| || | ||| ||| ||| | || | ||| | |
Sbjct 7517 CCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACA 7576
Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534
|| || || |||||||| ||||| || || || | || || || || || ||||
Sbjct 7577 TTCAA--GCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCAT 7634
Query 48535 AAATTCCTTCTATACTATCATCTATCAT 48562
| || ||||| || || || || ||||
Sbjct 7635 AGATGCCTTCGATGCTGTCCTCCTTCAT 7662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562103965864320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |