Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq88 114 1e-19 >seq88 Length=118767 Score = 114 bits (126), Expect = 1e-19 Identities = 253/377 (67%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||| || |||||||| || |||| || || | || || ||||| || |||||| | Sbjct 109291 AATCCTGACGAGGCTGTAGCAAATGGCGCTGCTGTACAGGCCGCTATCCTGTCTGGAGAT 109350 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 || || || | || || | ||| | || | || ||| | ||||| || || || Sbjct 109351 ACCACATCCAAGTCAACTAACGAGATTTTGCTCCTTGACGTTGCACCTCTGTCACTAGGC 109410 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | ||||| | ||| ||||| ||||| || | || | |||| || || ||||| Sbjct 109411 ATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCTCGAAACACAACCATTCCAACA 109470 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || || ||| || |||| ||||||||| || ||| ||| || ||| | Sbjct 109471 AAGAAGACTGAGACATTCTCGACGTTTTCAGATAACCAGCCTGGCGTTCTTATCCAAGTG 109530 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 | || || || | | |||||| ||||| || | | |||| || | | Sbjct 109531 TACGAGGGTGAGCGCCAGCGCACTAAGGATAACAACTTAATGGGTAAATTCGAACTCACT 109590 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || |||||||| || ||||| || || || || |||||||||||||||||| | |||||| Sbjct 109591 GGCATTCCTCCAGCGCCTCGCGGTGTTCCCCAGATTGAAGTTACTTTCGATCTTGATGCC 109650 Query 552567 AATGGAATTTTGAATGT 552583 ||||| ||| |||| || Sbjct 109651 AATGGTATTATGAACGT 109667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029259615457120