Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq95 143 2e-29 >seq95 Length=111136 Score = 143 bits (158), Expect = 2e-29 Identities = 201/280 (72%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 30009 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30068 ||| || ||||| || |||||||| | ||| || ||||||||||| || |||||| Sbjct 30453 GTGACAGGGAGGCAGGGCCATGAGATGTAGATCTCGGGCGTTCCAGGCGCTCATGATGAT 30394 Query 30069 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC---CACGGCGTTTTGC-AGCTGATCCA 30124 ||||||||| | || |||||| |||| ||| |||| || || ||||| || | Sbjct 30393 GCGCCTGTCGTACGGCTTGTTCTTGATCTTGTCTATCACGTCG----GCGAGCTGGTCGA 30338 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184 | ||| | || |||||||| ||| | ||| |||| ||||| || || || | ||||| Sbjct 30337 CTCCCTTGCCGGAGTAGTCGGCCTTGGCGTCGATGTATTCTGCGCCAAAGTGGCGCCACT 30278 Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30244 |||| |||||||| || |||||||| || | || | |||| || |||| |||| | Sbjct 30277 GGAAGCCGTACACGGGACCCAGGTCGCCTACCTCGCGGTGCGTGAGGCCCAGGCTGTCGA 30218 Query 30245 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30284 ||| || | || |||||| | ||||| ||||| || || Sbjct 30217 GAAACTCGCGCGATCCGTTGCCATCCCATATCTTGACGCC 30178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614173741424