Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq203 275 1e-68 seq60 131 3e-25 >seq203 Length=54532 Score = 275 bits (304), Expect = 1e-68 Identities = 906/1391 (65%), Gaps = 43/1391 (3%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 || ||||| | |||||| ||||||| || || | | |||||||| ||| || ||||| Sbjct 6410 GGATTGACAACCTGGAATTCACCTGCCAGGACACGGCGCTGGTAAATGTTGGACGTGTAA 6469 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||| ||||| ||||||||||| | || || || |||||||| || Sbjct 6470 GGCTCGAAGCACTCATTGTTACCCAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCG 6529 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC--GAAGCTCTGCCCAGT 213084 | ||| | ||| | | || ||||| ||| | | || || ||| | |||| | Sbjct 6530 AGCAGCAATGAGTTGCGAATCCCATGCTCCTTGATCTG-CTCCTTGAGGCTAT-CCCACT 6587 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| | |||| ||| |||||||| ||||||||| ||||| | |||||| | Sbjct 6588 CCCAGAGGTCAGA-AGG--------CTTCACGTCCCACATGTCGAACTGAAGGATGCCCT 6638 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 |||| ||||| | ||| || |||||| || || |||||||||| ||| | Sbjct 6639 CCGAGGCGGGAGAGCCCTTGAAAGTGGCGTAGGGCCCCTGTTCCTTGGCCAATTCGAGAG 6698 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 | || |||||||| | || ||||| |||||||||| | ||||||||| ||| | Sbjct 6699 AGGCAGTGAGGGCAGCATGATAAATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCTT 6758 Query 213265 CTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 | || ||| ||| ||||| || | |||| | ||||| || |||||||| || | Sbjct 6759 CAGGTGACTCGAATGGCATGCGCAAGGCAAGGAAAGCGTCAGCGAGACCCTGGACGCCAA 6818 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 || || |||| ||||| || ||| || | ||||| | |||||| |||| Sbjct 6819 CACCAATAGGTCGGTGTCGCATGTTGCTGTTTCGGGCCTCCTGGACGGGGTAGTGGTTGA 6878 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 || ||||| |||| ||||| || | || | ||||| | | || | || | Sbjct 6879 CATCAATGATTCTGTTCAGGTTACGAACAACGACCTGCGTGACCTCGTGAAGCTTCTGG- 6937 Query 213445 GATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCA 213498 || |||||| || || | ||||| | ||||| || | ||||| Sbjct 6938 -----AAGTCGTAGCGTCCCTCGTTGTAGTCAACAAAGGCGGGCAGAGCCAGAGAGGCCA 6992 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 |||||| || || ||||| | || | | | |||||| || || || ||||| |||||| Sbjct 6993 AGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATTTCCGTGCAGAGGTTGG 7052 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGA 213618 || ||||| || |||| ||||| || || |||| ||| | ||||||||||| Sbjct 7053 AGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCTTGTAGA 7112 Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGG 213678 ||||| | || || ||||| ||||| |||| || | |||||| | | ||| Sbjct 7113 GCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCTTC-TGG 7171 Query 213679 CCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGA 213738 | || ||| ||| | | | | ||| |||| || ||||| | | | Sbjct 7172 GCACGAATGGTCGCACGACCCTTGCCCTC--ACGCTCATACTTCTCATAGAGAGCCTCAA 7229 Query 213739 ATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAG 213797 | || | ||| || | | | |||| || || || ||| ||||| || |||| Sbjct 7230 ACTCCTCGCCGTAGCAGTCAG-CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAA 7288 Query 213798 TCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 || |||| | | ||| | || |||||| || || || | ||| || || ||| | Sbjct 7289 TCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAA 7348 Query 213858 TCCCTGG-TCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGAT 213916 || | | || || || ||| || ||| || |||| ||| || || ||||| | Sbjct 7349 TCACGAGCTCGGACT-TCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAACTCAAACAC 7407 Query 213917 GTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTG 213973 || |||||||| ||||||| ||| |||||||| || || || | |||| || ||||| Sbjct 7408 ATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTGTTGCCACCCTG 7467 Query 213974 GTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG 214033 ||| || ||||| ||||||| | || || | ||| | | || |||||| Sbjct 7468 GTCAACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGT 7527 Query 214034 TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG--GTTGCTCATGGAGAGCCCT 214091 |||||||| || || || || ||||| | ||| | | | || ||| | |||| Sbjct 7528 GCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCA-AGCCG- 7585 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 || ||||| || ||||||||||||||||||| | | | || || |||||| | Sbjct 7586 ATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTCG 7645 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGA--CGAGC 214209 |||||||| || | | || | | |||||| ||| |||| | | | || | || Sbjct 7646 ATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGCT--GACATTGAGGTGTGC 7703 Query 214210 CAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGG 214269 ||| |||||| || ||||| |||||| | | | ||| | || | ||| ||||| Sbjct 7704 CAGCGTTGAAGAGTGTGGGCGAGGCATGTGTAAAGAGTTTGCTGGACATGAGATGGTAGG 7763 Query 214270 TCTCCAGGACT 214280 | ||||||||| Sbjct 7764 TTTCCAGGACT 7774 >seq60 Length=156840 Score = 131 bits (144), Expect = 3e-25 Identities = 344/511 (67%), Gaps = 23/511 (5%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || |||| ||||||||||| |||||||| || |||| ||||||||||| Sbjct 139704 CTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTCTC 139763 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| || || |||| || ||||||||| | || ||| | | |||| Sbjct 139764 CATGAAGTCAAAAGGATTGGCCGTCTTATACACCT-TCTCGTTACCAAGAGCAACGAGCA 139822 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || |||| || || |||| ||||| | ||| | ||| |||||||| | || | Sbjct 139823 GGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAGAG 139882 Query 48018 ACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| |||||||||| || |||||||| | ||| || || || || | |||| Sbjct 139883 -CACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAATC 139941 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT---GGCATAG---AGCATG 48130 || | ||| || | || | || | ||||||| | | || |||| | Sbjct 139942 TGTT-------GGA-TCATCTGCTTGCTGGCTC-GGTGCTTCAAGTGAGAGTGCAGCAAG 139992 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| |||||||||| || || || ||| | ||||||||||| |||| Sbjct 139993 CAGGCAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGA 140052 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || || |||||||| || | || |||| || |||||| Sbjct 140053 CCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAA 140112 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTT-GTC-TG 48308 || || ||||| || || || || | | || |||| | | ||||| ||| || Sbjct 140113 ATACCTTCCACAGCAGCAAAAGCAACCAAGCGCTGGGCGAA-GCTGGATTCTTTGTCCTG 140171 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 | |||||| | ||||| ||||||||||| Sbjct 140172 A-ATCCAGCGGATAGCCCATTCTGCCTTCTT 140201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524788817920