Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq203 257 3e-63 seq60 114 2e-20 >seq203 Length=54532 Score = 257 bits (284), Expect = 3e-63 Identities = 845/1286 (66%), Gaps = 57/1286 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCT-CGGG 221475 || |||||||| || || ||||||||||| ||| ||||||||| ||| || || | || Sbjct 6704 GTGAGGGCAGCATGATAAATGGTCTCAAATATCTGCTTGTTGAG-CTCACGGGCTTCAGG 6762 Query 221476 AGAAGTGAAGGGCATACGCA--GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||| ||||| |||| ||| ||||| |||| || || ||||| || || | | Sbjct 6763 TGACTCGAATGGCATGCGCAAGGCAAG-GAAAG-CGTCAGCGAGACCCTGGACGCCAACA 6820 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || || || | ||||| | ||||| | ||| | || |||| ||||| || ||||| Sbjct 6821 CCAATAGGTCGGTGTCGCATGTTGCTGTTTCGGGC-CTCCTGG-ACGGGGTAGTGGTTGA 6878 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | || || | |||| ||||| || | ||| | |||||| ||||||||| Sbjct 6879 CATCAATGATTCTGTTCAGGTTACGAACAACGACCTGCGTGACCTCGTGAAGCTTCTGGA 6938 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | || || |||| | | || ||||| ||| || || | Sbjct 6939 AGTCGTA---------GCGTCCCTCGTTGTAG---TCAACAAAGGCGGGCAGAGCCAGAG 6986 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||| ||| || || || ||||| || | | |||| || || || || |||| Sbjct 6987 AGGCCAAGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATTTCCGTGCAGA 7046 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || ||| || |||| || || ||||| ||| | || || |||| Sbjct 7047 GGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCT 7106 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||| || ||| || ||||| ||| || |||| || || |||||| | Sbjct 7107 TGTAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCT 7166 Query 221892 CTCTGG-CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 ||||| | | | ||| | |||| | ||| ||| ||| ||||| Sbjct 7167 -TCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCATAG------ 7219 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| | |||||| || ||||| || ||||||| || || | ||| ||| Sbjct 7220 -AGAGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 7276 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 |||||| |||| | ||| | || ||| | || |||||| || || || ||||| || Sbjct 7277 ATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGA 7336 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || | ||| | | || || ||| |||| ||| || | || ||| | Sbjct 7337 GCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGG 7396 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| | || |||||||| ||||||| || | ||| | || || ||||||||| Sbjct 7397 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTG 7456 Query 222185 TTGCCACCCTGATCCACCATCCTCTC-CAGAGC-GTTGAAGATGCGAAGGGTCGGTACCA 222242 ||||||||||| || || || ||| ||| | |||||| | ||||| | || | | Sbjct 7457 TTGCCACCCTGGTCAAC-ATA-TCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGA 7514 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--T 222300 || ||||| ||||||||||| |||||| | || ||| | | ||| | Sbjct 7515 CACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAA---TACGGT 7571 Query 222301 GG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 || || || |||||||||||| || || ||||||||||||||| ||||||| |||| Sbjct 7572 GGACATTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGT 7631 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | |||||| || || ||||||||| | || | || || |||||||||| |||| Sbjct 7632 CATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGCTGAC 7691 Query 222420 ATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 ||| |||| || ||||| || || ||||| ||| ||||||||| || ||| Sbjct 7692 ATTGAGGTGTGCCA-GCGTTGAAGAGTGTGGGCGAGGCATGTGTAAAGAGTTTGCTGGAC 7750 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537 || |||| ||| || || | ||||| | || ||||| ||| || | | | || Sbjct 7751 ATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATACCG-ACAGCAAC 7809 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | ||| ||||| ||||||| ||| ||| || | ||| | |||| || || Sbjct 7810 ACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGTTGAGTTTGAGA--AGATAT 7867 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 || || | ||||||||| |||||||| | | || ||||||||| | | || | | Sbjct 7868 GACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTCTGTCATAGACAATG 7927 Query 222656 GCGGCGTCCAGCTCCGACTTGTGCTT 222681 |||| ||| || ||| | |||| || Sbjct 7928 GCGGAGTCGAGTTCCTCCCTGTGTTT 7953 >seq60 Length=156840 Score = 114 bits (126), Expect = 2e-20 Identities = 294/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || |||||||||||||| || || || ||||||||| | ||||| | | Sbjct 140146 AGCGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTA 140087 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||| ||| || || |||||||| || ||| |||||||| | ||| Sbjct 140086 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCT 140027 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | || ||||| | |||| ||| ||||||||| |||| || | |||||| | Sbjct 140026 CGCGTGATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCACTTGAAGC 139970 Query 26057 ACAAACCTTCTCAAG-AGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 || | | |||| ||| | | |||| || || | ||| ||||| |||||| | Sbjct 139969 ACCGAGC-CAGCAAGCAGATGATCCAACAG-ATTATTACAGATGCTGTCACCATCGAGCA 139912 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174 ||||||| |||||||||| || | | |||| Sbjct 139911 AGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTGGGCATGAATGCCACATTGATGAA 139852 Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCT 26233 || |||||||||| ||||||||| | ||||| || | || || || | | | Sbjct 139851 GCAGTACATTGAGTTTGTGGCCGATCGCCTGCTCGTTGC-TCTTGGTAACGAGAAGGTGT 139793 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 | | ||| | || || || ||||| ||||| ||||| || |||| || ||||| || | Sbjct 139792 ATAAGACGGCCAATCCTTTTGACTTCATGGAGAACATCTCATTGGGCGGCAAGACAAATT 139733 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||| ||| | || || || ||||| Sbjct 139732 TCTTTGAGAAGCGAGTTGGTGAGTATCA 139705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836811934720