Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq203 257 3e-63
seq60 114 2e-20
>seq203
Length=54532
Score = 257 bits (284), Expect = 3e-63
Identities = 845/1286 (66%), Gaps = 57/1286 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCT-CGGG 221475
|| |||||||| || || ||||||||||| ||| ||||||||| ||| || || | ||
Sbjct 6704 GTGAGGGCAGCATGATAAATGGTCTCAAATATCTGCTTGTTGAG-CTCACGGGCTTCAGG 6762
Query 221476 AGAAGTGAAGGGCATACGCA--GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533
|| ||| ||||| |||| ||| ||||| |||| || || ||||| || || | |
Sbjct 6763 TGACTCGAATGGCATGCGCAAGGCAAG-GAAAG-CGTCAGCGAGACCCTGGACGCCAACA 6820
Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591
|| || || | ||||| | ||||| | ||| | || |||| ||||| || |||||
Sbjct 6821 CCAATAGGTCGGTGTCGCATGTTGCTGTTTCGGGC-CTCCTGG-ACGGGGTAGTGGTTGA 6878
Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651
| || || | |||| ||||| || | ||| | |||||| |||||||||
Sbjct 6879 CATCAATGATTCTGTTCAGGTTACGAACAACGACCTGCGTGACCTCGTGAAGCTTCTGGA 6938
Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
| | | || || |||| | | || ||||| ||| || || |
Sbjct 6939 AGTCGTA---------GCGTCCCTCGTTGTAG---TCAACAAAGGCGGGCAGAGCCAGAG 6986
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771
||||| ||| || || || ||||| || | | |||| || || || || ||||
Sbjct 6987 AGGCCAAGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATTTCCGTGCAGA 7046
Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831
||||| || ||| || |||| || || ||||| ||| | || || ||||
Sbjct 7047 GGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCT 7106
Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891
|||||||||| || ||| || ||||| ||| || |||| || || |||||| |
Sbjct 7107 TGTAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCT 7166
Query 221892 CTCTGG-CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944
||||| | | | ||| | |||| | ||| ||| ||| |||||
Sbjct 7167 -TCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCATAG------ 7219
Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004
||||| | |||||| || ||||| || ||||||| || || | ||| |||
Sbjct 7220 -AGAGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 7276
Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064
|||||| |||| | ||| | || ||| | || |||||| || || || ||||| ||
Sbjct 7277 ATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGA 7336
Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124
|| | || | ||| | | || || ||| |||| ||| || | || ||| |
Sbjct 7337 GCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGG 7396
Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184
|||||||| | || |||||||| ||||||| || | ||| | || || |||||||||
Sbjct 7397 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTG 7456
Query 222185 TTGCCACCCTGATCCACCATCCTCTC-CAGAGC-GTTGAAGATGCGAAGGGTCGGTACCA 222242
||||||||||| || || || ||| ||| | |||||| | ||||| | || | |
Sbjct 7457 TTGCCACCCTGGTCAAC-ATA-TCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGA 7514
Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--T 222300
|| ||||| ||||||||||| |||||| | || ||| | | ||| |
Sbjct 7515 CACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAA---TACGGT 7571
Query 222301 GG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359
|| || || |||||||||||| || || ||||||||||||||| ||||||| ||||
Sbjct 7572 GGACATTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGT 7631
Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419
| |||||| || || ||||||||| | || | || || |||||||||| ||||
Sbjct 7632 CATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGCTGAC 7691
Query 222420 ATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478
||| |||| || ||||| || || ||||| ||| ||||||||| || |||
Sbjct 7692 ATTGAGGTGTGCCA-GCGTTGAAGAGTGTGGGCGAGGCATGTGTAAAGAGTTTGCTGGAC 7750
Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537
|| |||| ||| || || | ||||| | || ||||| ||| || | | | ||
Sbjct 7751 ATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATACCG-ACAGCAAC 7809
Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595
| ||| ||||| ||||||| ||| ||| || | ||| | |||| || ||
Sbjct 7810 ACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGTTGAGTTTGAGA--AGATAT 7867
Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655
|| || | ||||||||| |||||||| | | || ||||||||| | | || | |
Sbjct 7868 GACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTCTGTCATAGACAATG 7927
Query 222656 GCGGCGTCCAGCTCCGACTTGTGCTT 222681
|||| ||| || ||| | |||| ||
Sbjct 7928 GCGGAGTCGAGTTCCTCCCTGTGTTT 7953
>seq60
Length=156840
Score = 114 bits (126), Expect = 2e-20
Identities = 294/448 (66%), Gaps = 9/448 (2%)
Strand=Plus/Minus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| |||| || |||||||||||||| || || || ||||||||| | ||||| | |
Sbjct 140146 AGCGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTA 140087
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||| ||| || || |||||||| || ||| |||||||| | |||
Sbjct 140086 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCT 140027
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| || ||||| | |||| ||| ||||||||| |||| || | |||||| |
Sbjct 140026 CGCGTGATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCACTTGAAGC 139970
Query 26057 ACAAACCTTCTCAAG-AGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114
|| | | |||| ||| | | |||| || || | ||| ||||| |||||| |
Sbjct 139969 ACCGAGC-CAGCAAGCAGATGATCCAACAG-ATTATTACAGATGCTGTCACCATCGAGCA 139912
Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174
||||||| |||||||||| || | | ||||
Sbjct 139911 AGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTGGGCATGAATGCCACATTGATGAA 139852
Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCT 26233
|| |||||||||| ||||||||| | ||||| || | || || || | | |
Sbjct 139851 GCAGTACATTGAGTTTGTGGCCGATCGCCTGCTCGTTGC-TCTTGGTAACGAGAAGGTGT 139793
Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293
| | ||| | || || || ||||| ||||| ||||| || |||| || ||||| || |
Sbjct 139792 ATAAGACGGCCAATCCTTTTGACTTCATGGAGAACATCTCATTGGGCGGCAAGACAAATT 139733
Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321
||||||| ||| | || || || |||||
Sbjct 139732 TCTTTGAGAAGCGAGTTGGTGAGTATCA 139705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928836811934720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |