Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq88 123 2e-22
seq303 114 8e-20
seq5 87.8 1e-11
>seq88
Length=118767
Score = 123 bits (136), Expect = 2e-22
Identities = 399/613 (65%), Gaps = 15/613 (2%)
Strand=Plus/Plus
Query 475674 CTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTC 475733
||||||| ||||| || |||||||| || |||||||| || |||||||| || | || |
Sbjct 109172 CTAAACTCGACAAGTCTCAAGTCCACGATATTGTTCTAGTGGGAGGTTCTACTCGTATCC 109231
Query 475734 CAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTAAATGAAAG 475788
| | |||| | |||||| || || ||||| |||| | | | ||
Sbjct 109232 CGCGTGTTC-AGAA----TCTCATCAGCGATTACTTCAATGGCAAAACGCCTAGCAAGAG 109286
Query 475789 TGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG 475848
| |||||||| || ||||| ||| |||| |||||||| || || ||||| | || ||
Sbjct 109287 CATCAATCCTGACGAGGCTGTAGCAAATGGCGCTGCTGTACAGGCCGCTATCCTGTCTGG 109346
Query 475849 TCA-ATCAGA--CGAGA-AACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904
| | || | | || |||||| | ||| | || ||||||| | || || |||
Sbjct 109347 AGATACCACATCCAAGTCAACTAACGAG-ATTTTGCTCCTTGACGTTGCACCTCTGTCAC 109405
Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964
|||| ||||||| | ||| || || ||||| || | ||| |||| || | || |
Sbjct 109406 TAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCTCGAAACACAACCATTC 109465
Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024
|| || || | | ||| || || | ||| ||||| || | || ||||
Sbjct 109466 CAACAAAGAAGACTGAGACATTCTCGACGTTTTCAGATAACCAGCCTGGCGTTCTTATCC 109525
Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATC 476084
|| | | || ||||| | | |||||| ||||| ||| | | || | || | |
Sbjct 109526 AAGTGTACGAGGGTGAGCGCCAGCGCACTAAGGATAACAACTTAATGGGTAAATTCGAAC 109585
Query 476085 TTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144
| || |||||||| || || | || ||||| || |||||||||||||| ||| |||
Sbjct 109586 TCACTGGCATTCCTCCAGCGCCTCGCGGTGTTCCCCAGATTGAAGTTACTTTCGATCTTG 109645
Query 476145 ATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATA 476204
|||| ||||||||| | || || | ||| ||| || || | |||| || || |
Sbjct 109646 ATGCCAATGGTATTATGAACGTCTCCGCTCTTGAGAAGGGTACTGGCAAGTCCAACAAGA 109705
Query 476205 TAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATG 476264
| || || || | ||| | | || | ||| ||||| |||| ||||| | ||
Sbjct 109706 TTGTCATCACTAATGACAAGGGTCGTCTGTCTAAGGAAGAAATTGAACGCATGGTAGCTG 109765
Query 476265 AAGCCAAAGAGTT 476277
|||| || ||||
Sbjct 109766 AAGCTGAAAAGTT 109778
Score = 98.7 bits (108), Expect = 6e-15
Identities = 136/190 (72%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793
||||| || | |||||||||||||| ||||| || || || |||||||| || || ||
Sbjct 108557 GATGCTGTGGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 108616
Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853
|| || | ||||| || | || | || ||||| || ||||| ||||| || || ||
Sbjct 108617 GCTGGTACTATTGCCGGAATCAACATCTTGCGTATCATCAATGAGCCAACTGCCGCAGCT 108676
Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA---T 474910
|||| || || ||||| ||||| |||| || ||||| || |||||||| |
Sbjct 108677 ATTGCGTACGGCCTTGACAAGAAGGCTGAAGGCGAGCGCAATGTGTTGATCTTTGACCTT 108736
Query 474911 TGTGGAGGTA 474920
| |||||||
Sbjct 108737 GGCGGAGGTA 108746
>seq303
Length=27345
Score = 114 bits (126), Expect = 8e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| ||||||||||| ||| || || || || || || || || ||
Sbjct 11197 ACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGT 11138
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | || ||||| |||||||||||||| || ||||| |||||||| || || || ||
Sbjct 11137 GCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCC 11078
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| |||||||| |||||| || || || |||| || | | ||||
Sbjct 11077 CTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGA-CCTCAA 11019
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || ||||| || || || |||||||||||
Sbjct 11018 GAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTG 10979
Score = 107 bits (118), Expect = 1e-17
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| ||||| |||||||||||||| || || | || ||||| || || ||
Sbjct 11486 ACGAAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGT 11427
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | |||||| || ||||| ||||| ||||| ||||| || || || ||||| || ||
Sbjct 11426 ACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCC 11367
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||| ||||||||||| ||| || || || ||||||| | | | || |
Sbjct 11366 TTCCTTATCTTGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCA-CCTCGA 11308
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
|||| || || || ||||| | |||||| ||||
Sbjct 11307 GGGTGATGGTCTTTCCGGTCAAAGTCTTGACGA 11275
Score = 100 bits (110), Expect = 2e-15
Identities = 130/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| || || || || || | | ||| || || ||||||||||| || |||||||| ||
Sbjct 11671 TTGTAGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGC 11612
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
||||| |||||||| |||||||| ||||||||||| ||| ||| || ||||| |||
Sbjct 11611 TGATCGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCA 11552
Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | | || ||||| || || || || ||||| ||||| ||||| || ||
Sbjct 11551 GACGACTCCA-CCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTG 11496
>seq5
Length=479718
Score = 87.8 bits (96), Expect = 1e-11
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080
||||| ||| || || ||| || |||| || ||||||||||| ||||||| |||
Sbjct 56288 ATCCAGGTCTACGAGGGCGAACGATCTCTCACCAAGGATAATAACAACCTTGGAAAGTTT 56229
Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140
| || || || || |||||||| | || |||||||||||||| || | |||||
Sbjct 56228 GAGCTCACGGGCATCCCCCCTGCTCCTCGTGGTGTTCCTCAAATTGAGGTGTCGTTTGAG 56169
Query 476141 ATTGATGCAAATGGTATTCTTAATGT 476166
| ||||| ||||||||||| || ||
Sbjct 56168 CTGGATGCCAATGGTATTCTCAAAGT 56143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268149688341824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |