Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq88 123 2e-22 seq303 114 8e-20 seq5 87.8 1e-11 >seq88 Length=118767 Score = 123 bits (136), Expect = 2e-22 Identities = 399/613 (65%), Gaps = 15/613 (2%) Strand=Plus/Plus Query 475674 CTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTC 475733 ||||||| ||||| || |||||||| || |||||||| || |||||||| || | || | Sbjct 109172 CTAAACTCGACAAGTCTCAAGTCCACGATATTGTTCTAGTGGGAGGTTCTACTCGTATCC 109231 Query 475734 CAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTAAATGAAAG 475788 | | |||| | |||||| || || ||||| |||| | | | || Sbjct 109232 CGCGTGTTC-AGAA----TCTCATCAGCGATTACTTCAATGGCAAAACGCCTAGCAAGAG 109286 Query 475789 TGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG 475848 | |||||||| || ||||| ||| |||| |||||||| || || ||||| | || || Sbjct 109287 CATCAATCCTGACGAGGCTGTAGCAAATGGCGCTGCTGTACAGGCCGCTATCCTGTCTGG 109346 Query 475849 TCA-ATCAGA--CGAGA-AACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 | | || | | || |||||| | ||| | || ||||||| | || || ||| Sbjct 109347 AGATACCACATCCAAGTCAACTAACGAG-ATTTTGCTCCTTGACGTTGCACCTCTGTCAC 109405 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 |||| ||||||| | ||| || || ||||| || | ||| |||| || | || | Sbjct 109406 TAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCTCGAAACACAACCATTC 109465 Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 || || || | | ||| || || | ||| ||||| || | || |||| Sbjct 109466 CAACAAAGAAGACTGAGACATTCTCGACGTTTTCAGATAACCAGCCTGGCGTTCTTATCC 109525 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATC 476084 || | | || ||||| | | |||||| ||||| ||| | | || | || | | Sbjct 109526 AAGTGTACGAGGGTGAGCGCCAGCGCACTAAGGATAACAACTTAATGGGTAAATTCGAAC 109585 Query 476085 TTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 | || |||||||| || || | || ||||| || |||||||||||||| ||| ||| Sbjct 109586 TCACTGGCATTCCTCCAGCGCCTCGCGGTGTTCCCCAGATTGAAGTTACTTTCGATCTTG 109645 Query 476145 ATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATA 476204 |||| ||||||||| | || || | ||| ||| || || | |||| || || | Sbjct 109646 ATGCCAATGGTATTATGAACGTCTCCGCTCTTGAGAAGGGTACTGGCAAGTCCAACAAGA 109705 Query 476205 TAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATG 476264 | || || || | ||| | | || | ||| ||||| |||| ||||| | || Sbjct 109706 TTGTCATCACTAATGACAAGGGTCGTCTGTCTAAGGAAGAAATTGAACGCATGGTAGCTG 109765 Query 476265 AAGCCAAAGAGTT 476277 |||| || |||| Sbjct 109766 AAGCTGAAAAGTT 109778 Score = 98.7 bits (108), Expect = 6e-15 Identities = 136/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || | |||||||||||||| ||||| || || || |||||||| || || || Sbjct 108557 GATGCTGTGGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 108616 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || || | ||||| || | || | || ||||| || ||||| ||||| || || || Sbjct 108617 GCTGGTACTATTGCCGGAATCAACATCTTGCGTATCATCAATGAGCCAACTGCCGCAGCT 108676 Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA---T 474910 |||| || || ||||| ||||| |||| || ||||| || |||||||| | Sbjct 108677 ATTGCGTACGGCCTTGACAAGAAGGCTGAAGGCGAGCGCAATGTGTTGATCTTTGACCTT 108736 Query 474911 TGTGGAGGTA 474920 | ||||||| Sbjct 108737 GGCGGAGGTA 108746 >seq303 Length=27345 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| ||||||||||| ||| || || || || || || || || || Sbjct 11197 ACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGT 11138 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| |||||||||||||| || ||||| |||||||| || || || || Sbjct 11137 GCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCC 11078 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| |||||| || || || |||| || | | |||| Sbjct 11077 CTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGA-CCTCAA 11019 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| || || || ||||||||||| Sbjct 11018 GAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTG 10979 Score = 107 bits (118), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| |||||||||||||| || || | || ||||| || || || Sbjct 11486 ACGAAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGT 11427 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| ||||| ||||| ||||| || || || ||||| || || Sbjct 11426 ACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCC 11367 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| ||||||||||| ||| || || || ||||||| | | | || | Sbjct 11366 TTCCTTATCTTGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCA-CCTCGA 11308 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 |||| || || || ||||| | |||||| |||| Sbjct 11307 GGGTGATGGTCTTTCCGGTCAAAGTCTTGACGA 11275 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || || || || | | ||| || || ||||||||||| || |||||||| || Sbjct 11671 TTGTAGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGC 11612 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||| |||||||| ||||||||||| ||| ||| || ||||| ||| Sbjct 11611 TGATCGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCA 11552 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || || || ||||| ||||| ||||| || || Sbjct 11551 GACGACTCCA-CCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTG 11496 >seq5 Length=479718 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 ||||| ||| || || ||| || |||| || ||||||||||| ||||||| ||| Sbjct 56288 ATCCAGGTCTACGAGGGCGAACGATCTCTCACCAAGGATAATAACAACCTTGGAAAGTTT 56229 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | || || || || |||||||| | || |||||||||||||| || | ||||| Sbjct 56228 GAGCTCACGGGCATCCCCCCTGCTCCTCGTGGTGTTCCTCAAATTGAGGTGTCGTTTGAG 56169 Query 476141 ATTGATGCAAATGGTATTCTTAATGT 476166 | ||||| ||||||||||| || || Sbjct 56168 CTGGATGCCAATGGTATTCTCAAAGT 56143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268149688341824