Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq60 109 8e-19 seq303 89.7 8e-13 >seq60 Length=156840 Score = 109 bits (120), Expect = 8e-19 Identities = 196/286 (69%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || || || ||||||||||| | ||| || |||| || || ||| | ||||| Sbjct 140316 TCCTTGATGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATG 140375 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 ||||| || | ||||| | | |||||| || ||| | || | || | || Sbjct 140376 ATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCACCGCTGAAGCGCTCA 140435 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 ||||| ||||| || || || ||||| | || || |||||||||| | | ||| Sbjct 140436 ACCAAGTTCTCGTTGACGATGCCGTCGGAAGCAGCAAAAAATGCCAGTATGTGGGAGATG 140495 Query 18602 AAATGTTTTTCATTATCCTTGAGA---TTGTTCCATTCATCTATATCTTTTGATAGATCA 18658 || | ||| || | ||| || ||| |||||||| || | | ||||||||| ||||| Sbjct 140496 AAGTATTTCTCGTCATCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTTGACAGATCG 140555 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 | ||||| | ||||| || || | ||||||| ||||||||||| Sbjct 140556 ATCTCTTCGGCCGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTT 140601 >seq303 Length=27345 Score = 89.7 bits (98), Expect = 8e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || || ||||| ||||| || || || | || || || |||||||| || ||| Sbjct 11280 AAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGACAAC 11339 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 ||||||| || || |||||||| |||||||| ||||| || || || | |||||| Sbjct 11340 GTGAAAACCAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTGATTTTC 11399 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCG 156017 || ||||||||||| |||||| | | || | | ||||| || || || ||| | Sbjct 11400 GCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACAACATCCAGAAGGAGTCC 11459 Query 156018 ACGCTTCAT 156026 || |||||| Sbjct 11460 ACACTTCAT 11468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865705900800