Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 125 2e-23 seq203 116 1e-20 seq60 109 2e-18 seq41 104 7e-17 >seq5 Length=479718 Score = 125 bits (138), Expect = 2e-23 Identities = 386/590 (65%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || ||||| || | | ||| || || |||| | ||||||| || | ||| | | || Sbjct 126619 ATCAGACCGCATATCTCACAAACGTGAACGCGGAAAGCATCTGAGACCTCAAACAATCGT 126678 Query 251467 CCCTTGGTGAA-GCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 |||| ||| ||| | |||||||| | |||||| |||||||| |||||||| ||||| Sbjct 126679 TCCTTTAAGAAAGCG-GCGGCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAA 126737 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585 || ||||||||||| | || | || || |||| || || || | | || ||| Sbjct 126738 TCGGAGACCACCATCTCTGGCACGGCCTTCCACAGGTTGTCGTGTCATGATCTGCACAGG 126797 Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645 |||| | ||| ||| |||||| | ||||| || ||||| |||||| | | Sbjct 126798 ACCGCGAGCACGGGCATGAATCTTATCGTCCACCATGTGGCGAAGACGTTGGTAGTACGT 126857 Query 251646 GGGACCGATGAAGAT----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAA 251701 ||||||| ||||| |||| || ||| | | || | | || ||||||| Sbjct 126858 CGGACCGAAGAAGACCTGCGCTCTCAGCTTTTTACCC----GTGTGGCCATTGTACATAA 126913 Query 251702 CTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTA---GCTCTGAAGCAATATCACCAA 251758 ||| || | || | ||| ||| |||| | | ||||||| | || | Sbjct 126914 TTTCAAAGCCTCTTGACTGATAGCCATGTTTGCGCAAGAGCTCTGACACGGAGTCGACGG 126973 Query 251759 TCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGC 251818 | | | | | ||| ||| | || || | | |||| || | ||||||| | Sbjct 126974 TT---ACATCGGTGAAAGGCGTGGCATCACCCTCCATACCCTCAAGAGTAGACACTTTAC 127030 Query 251819 CTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGA 251878 | | ||| | | ||||| || ||||| || |||||||| || || |||| Sbjct 127031 TCAGCAAACACTCGATTAAATGGGCAATTGTCATTCGCGACGGAATAGCGTGTGGGTTGA 127090 Query 251879 TGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TG 251937 |||||||||| ||| | | || || |||||| |||||||||| || || ||| || Sbjct 127091 TGATGATGTCAGGTGTGACACCTTCTCGAGTGAACGGCATATCCTCTT-GTCGGTAAGTG 127149 Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || ||||||||||| ||||||||| |||||||||||||| Sbjct 127150 ACACCAATGGTACCCTTTTGTCCATGACGAGAAGCAAACTTATCACCAAT 127199 >seq203 Length=54532 Score = 116 bits (128), Expect = 1e-20 Identities = 464/721 (64%), Gaps = 17/721 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| || ||| ||||| || || ||| || || || |||||||| || Sbjct 7024 GTACTCGATAATTTCCGTGCAGAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATT 7083 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || |||||||| ||||||||||| || ||| | || | || ||||| |||| || Sbjct 7084 GCTCTTTCTGTTACAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGC 7143 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATC--TGCCTTCC 155807 ||||| || |||||| | ||||| ||| | | | | | |||| || Sbjct 7144 TTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAAT--GGTCGCACGACCCTTGCCCTCA 7201 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| ||| ||| || | | ||||| ||||| || ||| ||| || ||| Sbjct 7202 CGCTCATACTTCTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGG 7261 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAAT 155924 || | | |||||| | ||| | |||| || || ||| |||||| ||| || Sbjct 7262 CATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGA---CACGCTTCATGAAA 7318 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTG 155983 | ||| ||||| |||| ||| | || | || | |||| || | | ||||| Sbjct 7319 AGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGC-TCGGACTTCTTCCTTACCGTG 7377 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 ||||| || | || | ||| || | ||| | || ||||||| || || || Sbjct 7378 GTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGC 7437 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 ||| |||| | |||| |||||||| || ||||| | ||||| || ||||| || Sbjct 7438 AAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAAAC 7497 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || ||||| ||||| | ||||||||| ||||| ||||| || ||| | || |||| Sbjct 7498 ACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGT 7557 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219 | ||||| | || | || | || |||||||| | |||| || || || |||| Sbjct 7558 GGCGCGAATACGGTGGACATTCAAGCCGATACCACCAG-CCATCTTGGAGATCATGGCGC 7616 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 | ||| | || | | || ||||| || || || | ||| | || ||| Sbjct 7617 AGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGC 7676 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||| | | ||||| ||||||||||| ||||| || | ||||| ||| Sbjct 7677 AAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCATGTGTAA 7736 Query 156340 A 156340 | Sbjct 7737 A 7737 >seq60 Length=156840 Score = 109 bits (120), Expect = 2e-18 Identities = 328/500 (66%), Gaps = 6/500 (1%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||| ||||| | || |||||||| ||||| |||||||| | | Sbjct 140215 TTCCTTGCATTCGCAAGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGAATCCA 140156 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 | || || || | ||||||||||||| || || || ||||| ||||| ||||| | Sbjct 140155 GCTTCGCCCAGCGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGC-T 140097 Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | ||| ||||| || ||||| || |||||||| | | || || || || || ||| Sbjct 140096 TTTGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 140037 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAA 133675 ||| | || || | || |||| | ||||| || |||||| || || |||||| | Sbjct 140036 GAATTAATCTCGCGTGATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC 139977 Query 133676 TTAGAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735 || ||| | | || ||| | | ||| || | ||||||| ||| || || || Sbjct 139976 TTGAAGCACCGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATC 139917 Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTG 133795 ||| || ||| | | | ||| |||| || | || | || ||||||| || Sbjct 139916 GAGCAAGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTGGGCATGAATGCCACATTG 139857 Query 133796 ATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAG 133855 ||| ||| || ||||| ||||| || || | || |||| | ||| || ||| Sbjct 139856 ATGAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTCGTTGCTCTTGGTAACGAGAAG 139797 Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATT-GAATCAAAGAC 133914 | || | |||||||| || |||| ||||||| || | |||| | ||||| Sbjct 139796 GTGTATAAGACGGCCAATCCTTTTGACTTCATGGAGAACA-TCTCATTGGGCGGCAAGAC 139738 Query 133915 TAATTTCTTCGAG--GCGAG 133932 |||||||| ||| ||||| Sbjct 139737 AAATTTCTTTGAGAAGCGAG 139718 >seq41 Length=195597 Score = 104 bits (114), Expect = 7e-17 Identities = 182/263 (69%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| || || || |||||||| |||||| | || || ||||| || || || || Sbjct 56619 CTTGACTAGTCGTCGTTGAATATATCCAGTTTCGGCAGTCTTGACAGCAGTGTCGATGAG 56678 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| | || ||| |||| ||||||||||| | ||| ||| || || | | | | Sbjct 56679 ACCTTCTCGGCCAGCCATCGCATGGAAGAAAAACTCGGTGGGTGTGAGACCACGGAGATA 56738 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| | || ||||| ||||| || ||||| |||| |||| ||| || || || ||||| Sbjct 56739 CGAGTTTTCGACGAAGCCACGAGCTTCGGGGGAATAGTCGTCCTTTGTGAAATGCGGCAG 56798 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 ||| | || | | || | || ||||| || || || || ||||||| || | || Sbjct 56799 GGTTCGGTATTTGAAACCAAAGGGAATACGTTTGCCTTCGACAATCTGCTGACC--GACA 56856 Query 302823 CGA--AATCATCTGCGAAATATT 302843 || | |||||||||| || || Sbjct 56857 AGAGCAGTCATCTGCGAGATGTT 56879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804625927856