Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq5 125 2e-23
seq203 116 1e-20
seq60 109 2e-18
seq41 104 7e-17
>seq5
Length=479718
Score = 125 bits (138), Expect = 2e-23
Identities = 386/590 (65%), Gaps = 18/590 (3%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| ||||| || | | ||| || || |||| | ||||||| || | ||| | | ||
Sbjct 126619 ATCAGACCGCATATCTCACAAACGTGAACGCGGAAAGCATCTGAGACCTCAAACAATCGT 126678
Query 251467 CCCTTGGTGAA-GCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525
|||| ||| ||| | |||||||| | |||||| |||||||| |||||||| |||||
Sbjct 126679 TCCTTTAAGAAAGCG-GCGGCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAA 126737
Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585
|| ||||||||||| | || | || || |||| || || || | | || |||
Sbjct 126738 TCGGAGACCACCATCTCTGGCACGGCCTTCCACAGGTTGTCGTGTCATGATCTGCACAGG 126797
Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645
|||| | ||| ||| |||||| | ||||| || ||||| |||||| | |
Sbjct 126798 ACCGCGAGCACGGGCATGAATCTTATCGTCCACCATGTGGCGAAGACGTTGGTAGTACGT 126857
Query 251646 GGGACCGATGAAGAT----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAA 251701
||||||| ||||| |||| || ||| | | || | | || |||||||
Sbjct 126858 CGGACCGAAGAAGACCTGCGCTCTCAGCTTTTTACCC----GTGTGGCCATTGTACATAA 126913
Query 251702 CTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTA---GCTCTGAAGCAATATCACCAA 251758
||| || | || | ||| ||| |||| | | ||||||| | || |
Sbjct 126914 TTTCAAAGCCTCTTGACTGATAGCCATGTTTGCGCAAGAGCTCTGACACGGAGTCGACGG 126973
Query 251759 TCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGC 251818
| | | | | ||| ||| | || || | | |||| || | ||||||| |
Sbjct 126974 TT---ACATCGGTGAAAGGCGTGGCATCACCCTCCATACCCTCAAGAGTAGACACTTTAC 127030
Query 251819 CTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGA 251878
| | ||| | | ||||| || ||||| || |||||||| || || ||||
Sbjct 127031 TCAGCAAACACTCGATTAAATGGGCAATTGTCATTCGCGACGGAATAGCGTGTGGGTTGA 127090
Query 251879 TGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TG 251937
|||||||||| ||| | | || || |||||| |||||||||| || || ||| ||
Sbjct 127091 TGATGATGTCAGGTGTGACACCTTCTCGAGTGAACGGCATATCCTCTT-GTCGGTAAGTG 127149
Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||| || ||||||||||| ||||||||| ||||||||||||||
Sbjct 127150 ACACCAATGGTACCCTTTTGTCCATGACGAGAAGCAAACTTATCACCAAT 127199
>seq203
Length=54532
Score = 116 bits (128), Expect = 1e-20
Identities = 464/721 (64%), Gaps = 17/721 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || | ||| || ||| ||||| || || ||| || || || |||||||| ||
Sbjct 7024 GTACTCGATAATTTCCGTGCAGAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATT 7083
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| |||||||| ||||||||||| || ||| | || | || ||||| |||| ||
Sbjct 7084 GCTCTTTCTGTTACAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGC 7143
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATC--TGCCTTCC 155807
||||| || |||||| | ||||| ||| | | | | | |||| ||
Sbjct 7144 TTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAAT--GGTCGCACGACCCTTGCCCTCA 7201
Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| ||| ||| || | | ||||| ||||| || ||| ||| || |||
Sbjct 7202 CGCTCATACTTCTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGG 7261
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAAT 155924
|| | | |||||| | ||| | |||| || || ||| |||||| ||| ||
Sbjct 7262 CATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGA---CACGCTTCATGAAA 7318
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTG 155983
| ||| ||||| |||| ||| | || | || | |||| || | | |||||
Sbjct 7319 AGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGC-TCGGACTTCTTCCTTACCGTG 7377
Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043
||||| || | || | ||| || | ||| | || ||||||| || || ||
Sbjct 7378 GTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGC 7437
Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100
||| |||| | |||| |||||||| || ||||| | ||||| || ||||| ||
Sbjct 7438 AAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAAAC 7497
Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160
|| ||||| ||||| | ||||||||| ||||| ||||| || ||| | || ||||
Sbjct 7498 ACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGT 7557
Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219
| ||||| | || | || | || |||||||| | |||| || || || ||||
Sbjct 7558 GGCGCGAATACGGTGGACATTCAAGCCGATACCACCAG-CCATCTTGGAGATCATGGCGC 7616
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279
| ||| | || | | || ||||| || || || | ||| | || |||
Sbjct 7617 AGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGC 7676
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || | ||| | | ||||| ||||||||||| ||||| || | ||||| |||
Sbjct 7677 AAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCATGTGTAA 7736
Query 156340 A 156340
|
Sbjct 7737 A 7737
>seq60
Length=156840
Score = 109 bits (120), Expect = 2e-18
Identities = 328/500 (66%), Gaps = 6/500 (1%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| ||| ||||| | || |||||||| ||||| |||||||| | |
Sbjct 140215 TTCCTTGCATTCGCAAGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGAATCCA 140156
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
| || || || | ||||||||||||| || || || ||||| ||||| ||||| |
Sbjct 140155 GCTTCGCCCAGCGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGC-T 140097
Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615
| ||| ||||| || ||||| || |||||||| | | || || || || || |||
Sbjct 140096 TTTGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 140037
Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAA 133675
||| | || || | || |||| | ||||| || |||||| || || |||||| |
Sbjct 140036 GAATTAATCTCGCGTGATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC 139977
Query 133676 TTAGAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735
|| ||| | | || ||| | | ||| || | ||||||| ||| || || ||
Sbjct 139976 TTGAAGCACCGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATC 139917
Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTG 133795
||| || ||| | | | ||| |||| || | || | || ||||||| ||
Sbjct 139916 GAGCAAGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTGGGCATGAATGCCACATTG 139857
Query 133796 ATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAG 133855
||| ||| || ||||| ||||| || || | || |||| | ||| || |||
Sbjct 139856 ATGAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTCGTTGCTCTTGGTAACGAGAAG 139797
Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATT-GAATCAAAGAC 133914
| || | |||||||| || |||| ||||||| || | |||| | |||||
Sbjct 139796 GTGTATAAGACGGCCAATCCTTTTGACTTCATGGAGAACA-TCTCATTGGGCGGCAAGAC 139738
Query 133915 TAATTTCTTCGAG--GCGAG 133932
|||||||| ||| |||||
Sbjct 139737 AAATTTCTTTGAGAAGCGAG 139718
>seq41
Length=195597
Score = 104 bits (114), Expect = 7e-17
Identities = 182/263 (69%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| || || || |||||||| |||||| | || || ||||| || || || ||
Sbjct 56619 CTTGACTAGTCGTCGTTGAATATATCCAGTTTCGGCAGTCTTGACAGCAGTGTCGATGAG 56678
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702
||| | || ||| |||| ||||||||||| | ||| ||| || || | | | |
Sbjct 56679 ACCTTCTCGGCCAGCCATCGCATGGAAGAAAAACTCGGTGGGTGTGAGACCACGGAGATA 56738
Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762
||| | || ||||| ||||| || ||||| |||| |||| ||| || || || |||||
Sbjct 56739 CGAGTTTTCGACGAAGCCACGAGCTTCGGGGGAATAGTCGTCCTTTGTGAAATGCGGCAG 56798
Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822
||| | || | | || | || ||||| || || || || ||||||| || | ||
Sbjct 56799 GGTTCGGTATTTGAAACCAAAGGGAATACGTTTGCCTTCGACAATCTGCTGACC--GACA 56856
Query 302823 CGA--AATCATCTGCGAAATATT 302843
|| | |||||||||| || ||
Sbjct 56857 AGAGCAGTCATCTGCGAGATGTT 56879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471804625927856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |