Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq203 149 8e-30 seq14 96.9 4e-14 seq44 91.5 2e-12 >seq203 Length=54532 Score = 149 bits (164), Expect = 8e-30 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || | || |||| ||| || || || |||||||| | || || ||||| Sbjct 7465 CTGGTCAACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 7524 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||||||| || | ||| | ||| | |||||| | ||| | ||||| Sbjct 7525 CGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCAAGCC 7584 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | ||||| ||||||||||| |||||||| || Sbjct 7585 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTC 7644 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| ||||| ||||| ||||| || || | ||||| Sbjct 7645 GATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 7704 Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324 ||||||||||| ||||||| Sbjct 7705 AGCGTTGAAGAGTGTGGGCG 7724 >seq14 Length=324671 Score = 96.9 bits (106), Expect = 4e-14 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 || ||||| ||||| || ||||| || ||| |||| ||||| | || |||||||||||| Sbjct 214825 AATTACCTTGACATTAAACCTCTTCTTGATGTTGGCTGCAAAACCGTTGCCAACATGATC 214766 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||| || || || || || ||||| |||||||| Sbjct 214765 AAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTTAACAT 214725 >seq44 Length=178107 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1574059 TGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGG 1574118 |||| ||||| || |||||| | || ||||||||||| || ||| || | ||||| | | Sbjct 57291 TGCCTCCCGGCCGACACAAGCTCATTATCCTCGACGAAGCAGACAGCATGACGTCCGGTG 57232 Query 1574119 CCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGG 1574178 | || || || || || || ||||||| | ||||||| || || ||||| | | Sbjct 57231 CGCAACAAGCACTTCGCCGAACTATGGAAATTTATTCCAACACAACTCGATTTGCGTTTG 57172 Query 1574179 CGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 | |||||| |||| | | | |||||| | || ||| || || ||||||||||||| Sbjct 57171 CCTGCAACCAGTCGAACAAGATTATCGAGCCACTTCAATCGCGATGTGCCATTCTGCGCT 57112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107082739498096