Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq203 127 3e-23 seq60 89.7 8e-12 seq14 87.8 3e-11 >seq203 Length=54532 Score = 127 bits (140), Expect = 3e-23 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| | || |||| ||| || || || |||||||| | | || ||||| Sbjct 7465 CTGGTCAACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 7524 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||||||| || | ||| | ||| | |||||| | ||| | ||||| Sbjct 7525 CGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCAAGCC 7584 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | ||||| | || ||||| || |||||||| || Sbjct 7585 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTC 7644 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| || | | ||||| Sbjct 7645 GATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 7704 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 || |||||||| ||||||| Sbjct 7705 AGCGTTGAAGAGTGTGGGCG 7724 >seq60 Length=156840 Score = 89.7 bits (98), Expect = 8e-12 Identities = 174/255 (68%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| |||||| || || ||| ||| || || || |||||||| | | Sbjct 139691 TGACACCAGCCTTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCA 139750 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 ||||| |||||| | || || ||||||||| || ||||||| || Sbjct 139751 ATGAGATGTTCTCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTACCAA 139810 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||| ||| |||||||| ||||| || || ||||||||||| ||| | | ||| || Sbjct 139811 GAGCAACG--AGCAGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATT 139868 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| | || || |||| | ||| | | |||||||| |||||| ||| || Sbjct 139869 CATGCCCAGTAGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGC 139928 Query 794129 CTCGATGATGATCTG 794143 || | || ||||| Sbjct 139929 ATCTGTAATAATCTG 139943 >seq14 Length=324671 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712 || ||||| ||||| || || || || ||| | || ||||| ||||| |||||| | ||| Sbjct 214825 AATTACCTTGACATTAAACCTCTTCTTGATGTTGGCTGCAAAACCGTTGCCAACATGATC 214766 Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||| || || || || || ||||| |||||||| Sbjct 214765 AAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTTAACAT 214725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916173214302032