Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq88 140 2e-27
seq5 111 1e-18
seq41 87.8 1e-11
>seq88
Length=118767
Score = 140 bits (154), Expect = 2e-27
Identities = 227/327 (69%), Gaps = 0/327 (0%)
Strand=Plus/Minus
Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207
||| ||||||||||| ||| ||| | ||||||| |||||||||||||| || ||
Sbjct 108883 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACAAGGCGATTATCAAAATCCTCGCC 108824
Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267
||||| | || | || | || || | |||| ||| | || ||||||| || |||
Sbjct 108823 ACCCAAATGGGTGTCACCAGCTGTGGCCTTGACTTCGAAGATGCCGTCTTCAATAGTCAA 108764
Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327
||||| |||||| || || || || | ||||| || | ||||| || ||
Sbjct 108763 AAGAGATACATCAAAAGTACCTCCGCCAAGGTCAAAGATCAACACATTGCGCTCGCCTTC 108704
Query 282328 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387
|| || ||||| || ||||||| ||| || |||||||| ||||| || || | |||
Sbjct 108703 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCGGCAGTTGGCTCATTGATGATACGCAA 108644
Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447
| || | || ||||| | || || || || || ||||| | || || ||||||||
Sbjct 108643 GATGTTGATTCCGGCAATAGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 108584
Query 282448 ATATGCAGGAACAGTAATAACGGCATC 282474
||||| |||||||| | || |||||
Sbjct 108583 GTATGCTGGAACAGTGACCACAGCATC 108557
Score = 134 bits (148), Expect = 1e-25
Identities = 446/682 (65%), Gaps = 19/682 (3%)
Strand=Plus/Minus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
|| || | ||||||||||||||| | ||| || || |||||||| || || || || |
Sbjct 109667 ACGTTCATAATACCATTGGCATCAAGATCGAAAGTAACTTCAATCTGGGGAACACCGCGA 109608
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--TTATTATCTTTAGTGA 281549
| || || || || || | | ||| | |||| ||| || ||||| ||||||
Sbjct 109607 GGCGCTGGAGGAATGCCAGTGAGTTCGAATTTACCCA--TTAAGTTGTTATCCTTAGTGC 109550
Query 281550 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 281609
| || ||||||||| | | ||||||| ||| ||| || ||||||||| | || |
Sbjct 109549 GCTGGCGCTCACCCTCGTACACTTGGATAAGAACGCCAGGCTGGTTATCTGAAAACGTCG 109490
Query 281610 TAAATA-CTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668
||| ||| | || ||| ||||| |||||||||| | ||| | || |||||
Sbjct 109489 AGAATGTCTCAGTCTTCTTTGTT-GGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATC 109431
Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-- 281726
||||||||||| ||||| | || || || ||||| | || |||| || | ||| |
Sbjct 109430 ATACCACCAGCAGTTTCAATGCCTAGTGACAGAGGTGCAACGTCAAGGAGCAAAATCTCG 109371
Query 281727 TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785
|| | | || || || | ||| || ||||| || || | |||||| |||| |
Sbjct 109370 TTAGTTGACTTGGATGTGGTATCTCCAGACAGGATAGCGGCCTGTACAGCAGCGCCATTT 109311
Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 281845
|| ||||| || |||||||| | | | | | |||| |||||||| |||
Sbjct 109310 GCTACAGCCTCGTCAGGATTGATGCTCTTGCTAGGCGTTTTGCCATTGAAGTAATCGCTG 109251
Query 281846 AGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 281904
| || | ||| || || ||||||| || ||||| |||| ||||| || || ||
Sbjct 109250 ATGAGAT-TCTGAACACGCGGGATACGAGTAGAACCTCCCACTAGAACAATATCGTGGAC 109192
Query 281905 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964
|| || || || ||||| | || | | || || || || | ||| | ||
Sbjct 109191 TTGAGACTTGTCGAGTTTAGCGTCAGAAAGGACGCGGTCCACCGGCTGGAGAGTGGATCG 109132
Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 282024
|||| ||| ||||||||||| || || | |||| || || || |||||
Sbjct 109131 GAACAGATCTTGGCAAAGTTCTTCAAAACGGGCACGGGTAATAGGTGCAGAGTAGTCAAT 109072
Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT----CGAAGAAGATAGTGCAC 282080
|| || ||||| || || | || ||| ||||| || | || || || ||||
Sbjct 109071 GCCCTCAAACAATGAGTCGA--TC--TCGACGTTTGTGTTATGCTGAGCGGAGAGGGCAC 109016
Query 282081 GTTTAGCACGTTCACATGCTGT 282102
| || || ||||||||||||||
Sbjct 109015 GCTTCGCTCGTTCACATGCTGT 108994
>seq5
Length=479718
Score = 111 bits (122), Expect = 1e-18
Identities = 252/375 (67%), Gaps = 8/375 (2%)
Strand=Plus/Plus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
|| || ||||||||||||||||||| ||||| | || ||||||||||| || || |
Sbjct 56143 ACTTTGAGAATACCATTGGCATCCAGCTCAAACGACACCTCAATTTGAGGAACACCACGA 56202
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551
||||||| ||||| || | | ||| |||| || || |||||||| || ||||
Sbjct 56203 GGAGCAGGGGGGATGCCCGTGAGCTCAAACTTTCCAAGGTTGTTATTATCCTTGGTGAGA 56262
Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611
|||||| |||||| | | |||||| || |||| || ||||| | | || |
Sbjct 56263 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 56322
Query 281612 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670
|| | ||||| | || | ||| || | ||||| | ||| | |||||||| |
Sbjct 56323 AAGA-TCTGGCTCTTGCGAGTAGGGATGGGAGTGTTGCGGGGAATCAACTTGGTCATGAC 56381
Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730
||||||| || || | |||||||| ||||| ||||||| | || || || | |
Sbjct 56382 TCCACCAGTGGTCTCAATACCAAGAGTCAGAGGGTTGACATCCATGAGAACGATCTCCT- 56440
Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790
||| | | | || ||||| | | || || | ||||||||| | |||||
Sbjct 56441 CAGT-----ACCCTCCTCGCCGGAAAGAACACCAGCCTGGACGGCAGCACCAAAGGCAAC 56495
Query 281791 AGCTTCATCAGGATT 281805
||| ||||| |||||
Sbjct 56496 AGCCTCATCGGGATT 56510
>seq41
Length=195597
Score = 87.8 bits (96), Expect = 1e-11
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
|| |||||||| ||| | ||||| || ||||||||||||||||| ||| | ||||| ||
Sbjct 58169 GGCAAAGAAGGGCGTCTAAGAGGCAACTTGATGGGAAAGCGTGTTGATTTCTCTGCTCGA 58110
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| || || ||| |||| ||||| | | || | ||||||||||| || | | |||
Sbjct 58109 ACCGTCATCACTGGTGATGCTAATTTGTCACTGCACGAAGTTGGTGTCCCACGAAGCATT 58050
Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTG 432453
|| | | || || | | ||||| |||||| | | || ||||
Sbjct 58049 GCTAGGACGCTCACATATCCCGAAACAGTAACACCATACAACATTG 58004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740596622107488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |