Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq88 140 2e-27 seq5 111 1e-18 seq41 87.8 1e-11 >seq88 Length=118767 Score = 140 bits (154), Expect = 2e-27 Identities = 227/327 (69%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207 ||| ||||||||||| ||| ||| | ||||||| |||||||||||||| || || Sbjct 108883 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACAAGGCGATTATCAAAATCCTCGCC 108824 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267 ||||| | || | || | || || | |||| ||| | || ||||||| || ||| Sbjct 108823 ACCCAAATGGGTGTCACCAGCTGTGGCCTTGACTTCGAAGATGCCGTCTTCAATAGTCAA 108764 Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 ||||| |||||| || || || || | ||||| || | ||||| || || Sbjct 108763 AAGAGATACATCAAAAGTACCTCCGCCAAGGTCAAAGATCAACACATTGCGCTCGCCTTC 108704 Query 282328 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387 || || ||||| || ||||||| ||| || |||||||| ||||| || || | ||| Sbjct 108703 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCGGCAGTTGGCTCATTGATGATACGCAA 108644 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 | || | || ||||| | || || || || || ||||| | || || |||||||| Sbjct 108643 GATGTTGATTCCGGCAATAGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 108584 Query 282448 ATATGCAGGAACAGTAATAACGGCATC 282474 ||||| |||||||| | || ||||| Sbjct 108583 GTATGCTGGAACAGTGACCACAGCATC 108557 Score = 134 bits (148), Expect = 1e-25 Identities = 446/682 (65%), Gaps = 19/682 (3%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || | ||||||||||||||| | ||| || || |||||||| || || || || | Sbjct 109667 ACGTTCATAATACCATTGGCATCAAGATCGAAAGTAACTTCAATCTGGGGAACACCGCGA 109608 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--TTATTATCTTTAGTGA 281549 | || || || || || | | ||| | |||| ||| || ||||| |||||| Sbjct 109607 GGCGCTGGAGGAATGCCAGTGAGTTCGAATTTACCCA--TTAAGTTGTTATCCTTAGTGC 109550 Query 281550 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 281609 | || ||||||||| | | ||||||| ||| ||| || ||||||||| | || | Sbjct 109549 GCTGGCGCTCACCCTCGTACACTTGGATAAGAACGCCAGGCTGGTTATCTGAAAACGTCG 109490 Query 281610 TAAATA-CTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 ||| ||| | || ||| ||||| |||||||||| | ||| | || ||||| Sbjct 109489 AGAATGTCTCAGTCTTCTTTGTT-GGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATC 109431 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-- 281726 ||||||||||| ||||| | || || || ||||| | || |||| || | ||| | Sbjct 109430 ATACCACCAGCAGTTTCAATGCCTAGTGACAGAGGTGCAACGTCAAGGAGCAAAATCTCG 109371 Query 281727 TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 || | | || || || | ||| || ||||| || || | |||||| |||| | Sbjct 109370 TTAGTTGACTTGGATGTGGTATCTCCAGACAGGATAGCGGCCTGTACAGCAGCGCCATTT 109311 Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 281845 || ||||| || |||||||| | | | | | |||| |||||||| ||| Sbjct 109310 GCTACAGCCTCGTCAGGATTGATGCTCTTGCTAGGCGTTTTGCCATTGAAGTAATCGCTG 109251 Query 281846 AGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 281904 | || | ||| || || ||||||| || ||||| |||| ||||| || || || Sbjct 109250 ATGAGAT-TCTGAACACGCGGGATACGAGTAGAACCTCCCACTAGAACAATATCGTGGAC 109192 Query 281905 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964 || || || || ||||| | || | | || || || || | ||| | || Sbjct 109191 TTGAGACTTGTCGAGTTTAGCGTCAGAAAGGACGCGGTCCACCGGCTGGAGAGTGGATCG 109132 Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 282024 |||| ||| ||||||||||| || || | |||| || || || ||||| Sbjct 109131 GAACAGATCTTGGCAAAGTTCTTCAAAACGGGCACGGGTAATAGGTGCAGAGTAGTCAAT 109072 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT----CGAAGAAGATAGTGCAC 282080 || || ||||| || || | || ||| ||||| || | || || || |||| Sbjct 109071 GCCCTCAAACAATGAGTCGA--TC--TCGACGTTTGTGTTATGCTGAGCGGAGAGGGCAC 109016 Query 282081 GTTTAGCACGTTCACATGCTGT 282102 | || || |||||||||||||| Sbjct 109015 GCTTCGCTCGTTCACATGCTGT 108994 >seq5 Length=479718 Score = 111 bits (122), Expect = 1e-18 Identities = 252/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || ||||||||||||||||||| ||||| | || ||||||||||| || || | Sbjct 56143 ACTTTGAGAATACCATTGGCATCCAGCTCAAACGACACCTCAATTTGAGGAACACCACGA 56202 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 ||||||| ||||| || | | ||| |||| || || |||||||| || |||| Sbjct 56203 GGAGCAGGGGGGATGCCCGTGAGCTCAAACTTTCCAAGGTTGTTATTATCCTTGGTGAGA 56262 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 |||||| |||||| | | |||||| || |||| || ||||| | | || | Sbjct 56263 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 56322 Query 281612 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || | ||||| | || | ||| || | ||||| | ||| | |||||||| | Sbjct 56323 AAGA-TCTGGCTCTTGCGAGTAGGGATGGGAGTGTTGCGGGGAATCAACTTGGTCATGAC 56381 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 ||||||| || || | |||||||| ||||| ||||||| | || || || | | Sbjct 56382 TCCACCAGTGGTCTCAATACCAAGAGTCAGAGGGTTGACATCCATGAGAACGATCTCCT- 56440 Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 ||| | | | || ||||| | | || || | ||||||||| | ||||| Sbjct 56441 CAGT-----ACCCTCCTCGCCGGAAAGAACACCAGCCTGGACGGCAGCACCAAAGGCAAC 56495 Query 281791 AGCTTCATCAGGATT 281805 ||| ||||| ||||| Sbjct 56496 AGCCTCATCGGGATT 56510 >seq41 Length=195597 Score = 87.8 bits (96), Expect = 1e-11 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || |||||||| ||| | ||||| || ||||||||||||||||| ||| | ||||| || Sbjct 58169 GGCAAAGAAGGGCGTCTAAGAGGCAACTTGATGGGAAAGCGTGTTGATTTCTCTGCTCGA 58110 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || || ||| |||| ||||| | | || | ||||||||||| || | | ||| Sbjct 58109 ACCGTCATCACTGGTGATGCTAATTTGTCACTGCACGAAGTTGGTGTCCCACGAAGCATT 58050 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTG 432453 || | | || || | | ||||| |||||| | | || |||| Sbjct 58049 GCTAGGACGCTCACATATCCCGAAACAGTAACACCATACAACATTG 58004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740596622107488