Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq303 125 1e-23
seq1 98.7 2e-15
seq245 91.5 3e-13
>seq303
Length=27345
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | |||||||| || || |||| ||| || || ||||| || || || || |
Sbjct 11719 CCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 11660
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || || || || || |||||||| ||||| || | || ||||| |||||
Sbjct 11659 AGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGA 11600
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||||||||||||||| | ||| ||||| || || || ||| | || ||
Sbjct 11599 ATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACC 11540
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||| ||||| | ||||| || || ||||||||
Sbjct 11539 TCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
Score = 107 bits (118), Expect = 4e-18
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| |||||||| || ||||| || || || || | || | | ||||| || || ||
Sbjct 11178 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGC 11119
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|||||||||||||| || | |||||||| || || || || ||||| || ||||||||
Sbjct 11118 TTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCCTGAATCTTG 11059
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||| || || || ||| | || || || | ||| || |||||||| ||
Sbjct 11058 GTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTA 10999
Query 82788 AACGTCTTTACAAATATCTGCATTATT 82814
| || || || || || ||||| |||
Sbjct 10998 AGGGTTTTGACGAAAATTTGCATGATT 10972
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | || || || || || ||||| || || ||||| | || | | ||
Sbjct 11479 CGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCA 11420
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || || ||||| || || || | || || || ||||| || |||||||||
Sbjct 11419 TCTTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTA 11360
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||||||||| | ||| || || || || |||||| || || || || | || ||
Sbjct 11359 TCTTGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATG 11300
Query 82776 GTCTTGCCTGTCAACGTCTTTAC 82798
||||| || ||||| ||||| ||
Sbjct 11299 GTCTTTCCGGTCAAAGTCTTGAC 11277
>seq1
Length=703770
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
||||| ||||| || || | || ||| || || || || || || |||||||||||
Sbjct 263555 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 263496
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742
| || || || || || || || || |||||||| |||||||| | ||| ||||| ||
Sbjct 263495 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCG 263436
Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
||||| || | || || ||||| || || ||||| || |||| ||||| |||||
Sbjct 263435 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAAA 263377
>seq245
Length=42083
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || ||||| || ||||||||||| || ||||| || || || || |
Sbjct 31880 ACCACCACGCAGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGC 31821
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || || || || || || ||||||||||| |||| || || || || ||
Sbjct 31820 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGG 31761
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| || ||||| || || ||||| | || || || || || || || || || ||
Sbjct 31760 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 31701
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || |||||||| || || | ||||| || || ||||||||
Sbjct 31700 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981818545193232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |