Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq245 129 6e-25
seq303 116 4e-21
seq1 86.0 6e-12
>seq245
Length=42083
Score = 129 bits (142), Expect = 6e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| ||||| || ||||| ||| ||| ||| | | | ||||||||||||||||| ||
Sbjct 31844 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCGAGCTGCTTGCCAGCAA 31786
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
| ||||| ||||||||||| || || ||||| |||||||| |||||| ||||| |
Sbjct 31785 AGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGT 31726
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
|| | ||||||| | |||||| |||| ||||| || || || || || || || |
Sbjct 31725 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 31666
Query 133648 CGAAAATCTGCAT 133660
|||||||||||||
Sbjct 31665 CGAAAATCTGCAT 31653
>seq303
Length=27345
Score = 116 bits (128), Expect = 4e-21
Identities = 140/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| ||||| || ||||||||| | | ||| | | | || || |||||||| ||
Sbjct 11461 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCA-TCTTCCAGCTGCTTACC 11403
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 11402 AGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTGGTTTT 11343
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | || || | | |||||| |||| ||||| ||| || ||||||| |||
Sbjct 11342 CACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTCAAAGT 11283
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 11282 CTTGACGA 11275
Score = 105 bits (116), Expect = 6e-18
Identities = 149/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || ||||| ||||| || ||||| || | | || | | | ||||||||
Sbjct 11698 AAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCCA-TCCTCGAG 11640
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || ||| | || || |||||||| |||||||| ||||||||||| || ||
Sbjct 11639 CTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGAAT 11580
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| || | | || | ||||| | | |||||| |||| ||||| ||| || ||
Sbjct 11579 CTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTGATGGTCTTTCC 11520
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||| ||||||||
Sbjct 11519 TGTGAGGGTCTTGACGAAGATCTGCAT 11493
>seq1
Length=703770
Score = 86.0 bits (94), Expect = 6e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531
||||| |||||||| || ||| || | | | ||||| ||||||||||| || | ||
Sbjct 263555 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCA-TCCTCAAGCTGCTTGCCAGCAAAGAT 263497
Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591
| ||||||||||| || |||||||| ||||| || ||||| |||| | ||
Sbjct 263496 CAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTC 263437
Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651
| |||||| | || ||| || || | ||||| ||| || || ||||| || || || ||
Sbjct 263436 GATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAAA 263377
Query 133652 A 133652
|
Sbjct 263376 A 263376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483416642581120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |