Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq245 129 6e-25 seq303 116 4e-21 seq1 86.0 6e-12 >seq245 Length=42083 Score = 129 bits (142), Expect = 6e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| ||| ||| ||| | | | ||||||||||||||||| || Sbjct 31844 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCGAGCTGCTTGCCAGCAA 31786 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| ||||||||||| || || ||||| |||||||| |||||| ||||| | Sbjct 31785 AGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGT 31726 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||||| | |||||| |||| ||||| || || || || || || || | Sbjct 31725 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 31666 Query 133648 CGAAAATCTGCAT 133660 ||||||||||||| Sbjct 31665 CGAAAATCTGCAT 31653 >seq303 Length=27345 Score = 116 bits (128), Expect = 4e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| | | ||| | | | || || |||||||| || Sbjct 11461 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCA-TCTTCCAGCTGCTTACC 11403 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||||||||||||||||||||| || ||||| || Sbjct 11402 AGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTGGTTTT 11343 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | | |||||| |||| ||||| ||| || ||||||| ||| Sbjct 11342 CACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTCAAAGT 11283 Query 133643 TTTTACGA 133650 || |||| Sbjct 11282 CTTGACGA 11275 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| || ||||| || | | || | | | |||||||| Sbjct 11698 AAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCCA-TCCTCGAG 11640 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || || |||||||| |||||||| ||||||||||| || || Sbjct 11639 CTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGAAT 11580 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | || | ||||| | | |||||| |||| ||||| ||| || || Sbjct 11579 CTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTGATGGTCTTTCC 11520 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 11519 TGTGAGGGTCTTGACGAAGATCTGCAT 11493 >seq1 Length=703770 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| |||||||| || ||| || | | | ||||| ||||||||||| || | || Sbjct 263555 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCA-TCCTCAAGCTGCTTGCCAGCAAAGAT 263497 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || |||||||| ||||| || ||||| |||| | || Sbjct 263496 CAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTC 263437 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | || ||| || || | ||||| ||| || || ||||| || || || || Sbjct 263436 GATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAAA 263377 Query 133652 A 133652 | Sbjct 263376 A 263376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416642581120