Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq60 118 3e-21 seq12 111 4e-19 seq203 96.9 8e-15 >seq60 Length=156840 Score = 118 bits (130), Expect = 3e-21 Identities = 156/212 (74%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGAT---GATTCC-GCTAATTTTTCTAC 131856 ||||| |||||||||||||| |||||||| || || ||| ||| || | Sbjct 140201 AAGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGAATCCAGCT------TCGCC 140148 Query 131857 AAGA-CTTG-TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 || |||| | ||||||||| ||| |||||||| ||||| |||||||| | || Sbjct 140147 CAGCGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCT 140088 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 ||||| ||||| ||||||||||| |||||||| || ||| | || ||||| |||| ||| Sbjct 140087 ATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATC 140028 Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 ||| | ||||| | ||||| || || ||||| Sbjct 140027 TCGCGTGATGAGGGCTTGCACACAGACTTTGC 139996 >seq12 Length=329709 Score = 111 bits (122), Expect = 4e-19 Identities = 172/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 279854 CGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGT 279913 ||||||||||| | | || ||||| ||||||||| ||||| ||| || | | | | Sbjct 292302 CGTTCTATTCCGTCTGTTATTGATGGCTTGAAACCTGGTCAGCGAAAGGTTCTCTACGCT 292361 Query 279914 TGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCA 279973 ||||| || | || ||||| ||||| | |||| | || | || |||||||| || Sbjct 292362 TGTTTTAAGCGGAACTTGGTCAAGGATAAAAAGGTTGTTGAGCTTGCTGGTTATGTGTCT 292421 Query 279974 GAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCC 280033 ||||| | | || |||||||||||||| || || ||| | ||| | || | || Sbjct 292422 GAACAGACTGCATACCATCACGGTGAAGCCTCACTGCAACAAACAATTATTGGCTTGGCG 292481 Query 280034 CAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCT 280093 ||| ||||| | | || |||||| | ||| | | ||||| |||| | ||||||||| Sbjct 292482 CAAAATTTTGTTGGATCTAACAACATTAATATTTTAGAACCAAGTGGTAACTTTGGTTCT 292541 Query 280094 CGTATT 280099 ||| || Sbjct 292542 CGTCTT 292547 >seq203 Length=54532 Score = 96.9 bits (106), Expect = 8e-15 Identities = 216/321 (67%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA--- 110745 |||| ||| | | || |||||| ||||||| | |||||| | || ||||| || | Sbjct 7511 TTCCCATGCTTCGTGTTTTCAACAACACTGCCAGATATGTTGACCAGGGTGGCAACAAGC 7452 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 || ||| ||||||| || || | || |||||||| | ||| | ||||| ||| | | Sbjct 7451 GACCTGGTGCATTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTG 7392 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | || || || || || |||||| |||| ||||||||||| ||| | | Sbjct 7391 ATTTGCGAAAGAACCACGGTAAGGAAGAAGTCCGAGCTCGTGATTTATTCCTTGCTCTTT 7332 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 ||||| | ||| | |||||||| ||||| || | || || ||| |||| ||||| | Sbjct 7331 GGATTCCCGATCTTTTCATGAAGCGTGTCGAAAAGAACGGTGATTGGACTCTGATGTG-C 7273 Query 110926 CTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 | || || | || || || |||| || || | |||||||| | || || || Sbjct 7272 CCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCTCTCTATGAG 7213 Query 110985 AAATATGAAAAAGAAGGCAAG 111005 || ||||| || |||||| Sbjct 7212 AAGTATGAGCGTGAGGGCAAG 7192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186802338245168