Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq60 118 3e-21
seq12 111 4e-19
seq203 96.9 8e-15
>seq60
Length=156840
Score = 118 bits (130), Expect = 3e-21
Identities = 156/212 (74%), Gaps = 12/212 (6%)
Strand=Plus/Minus
Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGAT---GATTCC-GCTAATTTTTCTAC 131856
||||| |||||||||||||| |||||||| || || ||| ||| || |
Sbjct 140201 AAGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGAATCCAGCT------TCGCC 140148
Query 131857 AAGA-CTTG-TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
|| |||| | ||||||||| ||| |||||||| ||||| |||||||| | ||
Sbjct 140147 CAGCGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCT 140088
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974
||||| ||||| ||||||||||| |||||||| || ||| | || ||||| |||| |||
Sbjct 140087 ATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATC 140028
Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTTGC 132006
||| | ||||| | ||||| || || |||||
Sbjct 140027 TCGCGTGATGAGGGCTTGCACACAGACTTTGC 139996
>seq12
Length=329709
Score = 111 bits (122), Expect = 4e-19
Identities = 172/246 (70%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 279854 CGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGT 279913
||||||||||| | | || ||||| ||||||||| ||||| ||| || | | | |
Sbjct 292302 CGTTCTATTCCGTCTGTTATTGATGGCTTGAAACCTGGTCAGCGAAAGGTTCTCTACGCT 292361
Query 279914 TGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCA 279973
||||| || | || ||||| ||||| | |||| | || | || |||||||| ||
Sbjct 292362 TGTTTTAAGCGGAACTTGGTCAAGGATAAAAAGGTTGTTGAGCTTGCTGGTTATGTGTCT 292421
Query 279974 GAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCC 280033
||||| | | || |||||||||||||| || || ||| | ||| | || | ||
Sbjct 292422 GAACAGACTGCATACCATCACGGTGAAGCCTCACTGCAACAAACAATTATTGGCTTGGCG 292481
Query 280034 CAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCT 280093
||| ||||| | | || |||||| | ||| | | ||||| |||| | |||||||||
Sbjct 292482 CAAAATTTTGTTGGATCTAACAACATTAATATTTTAGAACCAAGTGGTAACTTTGGTTCT 292541
Query 280094 CGTATT 280099
||| ||
Sbjct 292542 CGTCTT 292547
>seq203
Length=54532
Score = 96.9 bits (106), Expect = 8e-15
Identities = 216/321 (67%), Gaps = 5/321 (2%)
Strand=Plus/Minus
Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA--- 110745
|||| ||| | | || |||||| ||||||| | |||||| | || ||||| || |
Sbjct 7511 TTCCCATGCTTCGTGTTTTCAACAACACTGCCAGATATGTTGACCAGGGTGGCAACAAGC 7452
Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805
|| ||| ||||||| || || | || |||||||| | ||| | ||||| ||| | |
Sbjct 7451 GACCTGGTGCATTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTG 7392
Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865
| | || || || || || |||||| |||| ||||||||||| ||| | |
Sbjct 7391 ATTTGCGAAAGAACCACGGTAAGGAAGAAGTCCGAGCTCGTGATTTATTCCTTGCTCTTT 7332
Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925
||||| | ||| | |||||||| ||||| || | || || ||| |||| ||||| |
Sbjct 7331 GGATTCCCGATCTTTTCATGAAGCGTGTCGAAAAGAACGGTGATTGGACTCTGATGTG-C 7273
Query 110926 CTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984
| || || | || || || |||| || || | |||||||| | || || ||
Sbjct 7272 CCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCTCTCTATGAG 7213
Query 110985 AAATATGAAAAAGAAGGCAAG 111005
|| ||||| || ||||||
Sbjct 7212 AAGTATGAGCGTGAGGGCAAG 7192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186802338245168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |