Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq60 150 3e-30
seq203 145 1e-28
seq44 91.5 2e-12
>seq60
Length=156840
Score = 150 bits (166), Expect = 3e-30
Identities = 214/296 (72%), Gaps = 5/296 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| |||||||||||||| ||||| ||||| ||||| ||| |||| |
Sbjct 140609 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACGGCCGAAGAGATCGATC 140551
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTG--TCG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891
| || | | ||||| ||| |||| || |||||| | ||||||
Sbjct 140550 TGTCAAAAGATTTGCACGACTGGAACAATCGTCTGAATGATGACGAGAAATACTTCATCT 140491
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| | || || |||||| || || ||| |||||||| ||||||| ||| |
Sbjct 140490 CCCACATACTGGCATTTTTT-GCTGCTTCCGACGGCATCGTCAACGAGAACTTGGTTGAG 140432
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | || |||||| | || ||||| |||| |||||||| |||||||||
Sbjct 140431 CGCTTCAGCGGTGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATG 140372
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || ||||||||||| ||||| ||||| ||| | |||||||||||| |||||||
Sbjct 140371 ATGGAGAACATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 140316
>seq203
Length=54532
Score = 145 bits (160), Expect = 1e-28
Identities = 336/502 (67%), Gaps = 17/502 (3%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||| ||||| |||||| | ||||| | | | | ||||||| |||| |||||||
Sbjct 7950 CACAGGGAGGAACTCGACTCCGCCATTGTCTATGACAGAGACTTCAACTACCAGTACTTT 7891
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801
|| | ||| || ||||| || || |||| | || | | |||||||||
Sbjct 7890 GGCTTCAAGACTTTAGAGCGGTCATATCTTCTCAAACTCAACGGCAAGATTGTCGAGCGG 7831
Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861
||||| | ||| | |||||||| || | || | |||| || ||||||
Sbjct 7830 CCCCAACACATGATTATGCGTGTTGCTGTCGGTA--TCTGGG------GA----GACAAT 7783
Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGT-TGTTCACCTCAGC 259920
| |||| || || | |||||| | |||||| ||||| | || || ||
Sbjct 7782 A---TTGAGCGAGTCCTGGAAACCTACCATCTCATGTC-CAGCAAACTCTTTACACATGC 7727
Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980
||||||| ||||| || || ||||| || | ||| ||||| ||||| || |
Sbjct 7726 CTCGCCCACACTCTTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGT 7667
Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040
|||||||||| || ||||| ||||||||||||||||||||| ||||| | ||
Sbjct 7666 TGACATGAAGGAGGACAGCATCGAAGGCATCTATGACACGCTCAAGACCTGCGCCATGAT 7607
Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100
||||||| ||| || || ||||| || | ||| | |||||| | ||| | ||
Sbjct 7606 CTCCAAGATGGCTGGTGGTATCGGCTTGAATGTCCACCGTATTCGCGCCACTGGCTCTTA 7547
Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160
| | || |||||||||||| |||||| || | | ||||||||||| ||||| ||| |
Sbjct 7546 CATTGCAGGCACCAACGGCACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAA 7487
Query 260161 CACGGCGCGCTACGTCGACCAG 260182
||| || | || || ||||||
Sbjct 7486 CACTGCCAGATATGTTGACCAG 7465
>seq44
Length=178107
Score = 91.5 bits (100), Expect = 2e-12
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 332874 AGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGG 332933
||||||| |||||||| || || || | |||||| | | | |||| ||||||||
Sbjct 57112 AGCGCAGAATGGCACATCGCGATTGAAGTGGCTCGATAATCTTGTTCGACTGGTTGCAGG 57171
Query 332934 CCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGG 332993
| | ||||| || || || |||| || ||||||| || || || || ||||| |
Sbjct 57172 CAAACGCAAATCGAGTTGTGTTGGAATAAATTTCCATAGTTCGGCGAAGTGCTTGTTGCG 57231
Query 332994 CCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCA 333053
| | | ||| | || ||| || ||||||||||| |||| |||||| || ||| | ||||
Sbjct 57232 CACCGGACGTCATGCTGTCTGCTTCGTCGAGGATAATGAGCTTGTGTCGGCCGGGAGGCA 57291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177744841135456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |