Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq60 150 3e-30 seq203 145 1e-28 seq44 91.5 2e-12 >seq60 Length=156840 Score = 150 bits (166), Expect = 3e-30 Identities = 214/296 (72%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| ||||| ||||| ||||| ||| |||| | Sbjct 140609 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACGGCCGAAGAGATCGATC 140551 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTG--TCG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 | || | | ||||| ||| |||| || |||||| | |||||| Sbjct 140550 TGTCAAAAGATTTGCACGACTGGAACAATCGTCTGAATGATGACGAGAAATACTTCATCT 140491 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| | || || |||||| || || ||| |||||||| ||||||| ||| | Sbjct 140490 CCCACATACTGGCATTTTTT-GCTGCTTCCGACGGCATCGTCAACGAGAACTTGGTTGAG 140432 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || |||||| | || ||||| |||| |||||||| ||||||||| Sbjct 140431 CGCTTCAGCGGTGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATG 140372 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| ||||| ||||| ||| | |||||||||||| ||||||| Sbjct 140371 ATGGAGAACATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 140316 >seq203 Length=54532 Score = 145 bits (160), Expect = 1e-28 Identities = 336/502 (67%), Gaps = 17/502 (3%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||| ||||| |||||| | ||||| | | | | ||||||| |||| ||||||| Sbjct 7950 CACAGGGAGGAACTCGACTCCGCCATTGTCTATGACAGAGACTTCAACTACCAGTACTTT 7891 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | ||| || ||||| || || |||| | || | | ||||||||| Sbjct 7890 GGCTTCAAGACTTTAGAGCGGTCATATCTTCTCAAACTCAACGGCAAGATTGTCGAGCGG 7831 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 ||||| | ||| | |||||||| || | || | |||| || |||||| Sbjct 7830 CCCCAACACATGATTATGCGTGTTGCTGTCGGTA--TCTGGG------GA----GACAAT 7783 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGT-TGTTCACCTCAGC 259920 | |||| || || | |||||| | |||||| ||||| | || || || Sbjct 7782 A---TTGAGCGAGTCCTGGAAACCTACCATCTCATGTC-CAGCAAACTCTTTACACATGC 7727 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 ||||||| ||||| || || ||||| || | ||| ||||| ||||| || | Sbjct 7726 CTCGCCCACACTCTTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGT 7667 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 |||||||||| || ||||| ||||||||||||||||||||| ||||| | || Sbjct 7666 TGACATGAAGGAGGACAGCATCGAAGGCATCTATGACACGCTCAAGACCTGCGCCATGAT 7607 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| ||| || || ||||| || | ||| | |||||| | ||| | || Sbjct 7606 CTCCAAGATGGCTGGTGGTATCGGCTTGAATGTCCACCGTATTCGCGCCACTGGCTCTTA 7547 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || |||||||||||| |||||| || | | ||||||||||| ||||| ||| | Sbjct 7546 CATTGCAGGCACCAACGGCACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAA 7487 Query 260161 CACGGCGCGCTACGTCGACCAG 260182 ||| || | || || |||||| Sbjct 7486 CACTGCCAGATATGTTGACCAG 7465 >seq44 Length=178107 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 332874 AGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGG 332933 ||||||| |||||||| || || || | |||||| | | | |||| |||||||| Sbjct 57112 AGCGCAGAATGGCACATCGCGATTGAAGTGGCTCGATAATCTTGTTCGACTGGTTGCAGG 57171 Query 332934 CCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGG 332993 | | ||||| || || || |||| || ||||||| || || || || ||||| | Sbjct 57172 CAAACGCAAATCGAGTTGTGTTGGAATAAATTTCCATAGTTCGGCGAAGTGCTTGTTGCG 57231 Query 332994 CCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCA 333053 | | | ||| | || ||| || ||||||||||| |||| |||||| || ||| | |||| Sbjct 57232 CACCGGACGTCATGCTGTCTGCTTCGTCGAGGATAATGAGCTTGTGTCGGCCGGGAGGCA 57291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177744841135456