Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq245 143 2e-29 seq303 107 2e-18 seq1 105 6e-18 >seq245 Length=42083 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || |||||||| || |||||||| |||||| Sbjct 31879 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 31820 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| || | ||||||||||||| ||| Sbjct 31819 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGA 31760 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||| | |||| | | |||||| || ||||| Sbjct 31759 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 31701 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || ||||| | || || || || |||||||| Sbjct 31700 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31653 >seq303 Length=27345 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 35502 CTTTATT-TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560 ||||| | ||||||||| || | |||||||||||| || || |||||| || |||||| Sbjct 11728 CTTTACTGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTG 11669 Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620 || || || | || || | || || |||||||| || || || || | |||||||| Sbjct 11668 TAGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGA 11609 Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTC 35680 || | ||||| || ||||| || ||||| |||| | | | | ||||| | Sbjct 11608 TCGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGAC 11549 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| | ||||| || || || || | || || || || |||||||| Sbjct 11548 GACTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| |||||| ||||||||||| || || Sbjct 11202 CCACCACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCG 11143 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || ||||| |||| ||||| || || | || Sbjct 11142 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGG 11083 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| ||||| ||| | | | | | ||||| || || ||| Sbjct 11082 ATCCCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 11023 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | ||||| || || || ||||| Sbjct 11022 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCAT 10976 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||||| | || || | || |||||||||||||| || || Sbjct 11456 CTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCTTCCAGCTGCTTACCAGCGAA 11397 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||| | || ||||| || ||||| |||| || Sbjct 11396 AATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTGGTTTTCA-CGT 11338 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || || || |||||||| | ||||| || || || |||||||| || | Sbjct 11337 TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTGA 11278 Query 35724 C 35724 | Sbjct 11277 C 11277 >seq1 Length=703770 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || || ||||| || |||| |||||| | || || |||||||| || ||||| | Sbjct 263557 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 263498 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||| ||| ||||| || | | | Sbjct 263497 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGT 263438 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||||| ||||| || |||||||||| || ||||||| Sbjct 263437 CGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAA 263378 Query 35727 A 35727 | Sbjct 263377 A 263377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789723175040