Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq245 143 2e-29
seq303 107 2e-18
seq1 105 6e-18
>seq245
Length=42083
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||||| || | || |||||||| || |||||||| ||||||
Sbjct 31879 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 31820
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || |||||||| || ||||| || | ||||||||||||| |||
Sbjct 31819 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGA 31760
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || |||||||||| |||||| ||| | |||| | | |||||| || |||||
Sbjct 31759 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 31701
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| | |||||||| || ||||| | || || || || ||||||||
Sbjct 31700 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31653
>seq303
Length=27345
Score = 107 bits (118), Expect = 2e-18
Identities = 166/236 (70%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 35502 CTTTATT-TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560
||||| | ||||||||| || | |||||||||||| || || |||||| || ||||||
Sbjct 11728 CTTTACTGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTG 11669
Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620
|| || || | || || | || || |||||||| || || || || | ||||||||
Sbjct 11668 TAGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGA 11609
Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTC 35680
|| | ||||| || ||||| || ||||| |||| | | | | ||||| |
Sbjct 11608 TCGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGAC 11549
Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||||||| | ||||| || || || || | || || || || ||||||||
Sbjct 11548 GACTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||| | ||| | ||| |||||| ||||||||||| || ||
Sbjct 11202 CCACCACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCG 11143
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || ||||| |||| ||||| || || | ||
Sbjct 11142 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGG 11083
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| ||||| ||| | | | | | ||||| || || |||
Sbjct 11082 ATCCCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 11023
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | ||||| || || || |||||
Sbjct 11022 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCAT 10976
Score = 89.7 bits (98), Expect = 5e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||||||||| | || || | || |||||||||||||| || ||
Sbjct 11456 CTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCTTCCAGCTGCTTACCAGCGAA 11397
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | ||| | || ||||| || ||||| |||| ||
Sbjct 11396 AATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTGGTTTTCA-CGT 11338
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | || || || |||||||| | ||||| || || || |||||||| || |
Sbjct 11337 TGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTGA 11278
Query 35724 C 35724
|
Sbjct 11277 C 11277
>seq1
Length=703770
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || || ||||| || |||| |||||| | || || |||||||| || ||||| |
Sbjct 263557 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 263498
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | || | || |||||| ||| ||||| || | | |
Sbjct 263497 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGT 263438
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | |||||| || || ||||||| ||||| || |||||||||| || |||||||
Sbjct 263437 CGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAA 263378
Query 35727 A 35727
|
Sbjct 263377 A 263377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450789723175040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |