Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq303 140 3e-28 seq245 122 9e-23 seq60 93.3 4e-14 >seq303 Length=27345 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| || || || || || ||||| |||||||||||||| | Sbjct 11202 CCACCACGGAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCG 11143 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| |||||| |||||||| || Sbjct 11142 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGG 11083 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | ||||| || || || || Sbjct 11082 ATCCCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 11023 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | ||||| |||||||||||||| Sbjct 11022 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCAT 10976 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||||||| | || | || || ||||| || ||||||||||| ||| || | Sbjct 11707 CGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCCA 11648 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || |||||||| || || || || || | ||||||||||||||| || |||||||| || Sbjct 11647 TCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTTA 11588 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| || ||| || ||| | ||||| ||||| ||||| ||||| || ||| Sbjct 11587 TCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTGATG 11528 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | || || ||||| || ||||| Sbjct 11527 GTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 >seq245 Length=42083 Score = 122 bits (134), Expect = 9e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||| ||||| || |||||||||||| | | |||| | Sbjct 31870 AGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 31811 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| || | |||||||| || || || ||||| || Sbjct 31810 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCC 31751 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 31750 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 31691 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | || || |||||||| ||||| ||| Sbjct 31690 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 31649 >seq60 Length=156840 Score = 93.3 bits (102), Expect = 4e-14 Identities = 313/471 (66%), Gaps = 26/471 (6%) Strand=Plus/Plus Query 21427 TATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATA 21486 || || || || || | |||||||||||||| || || | | || ||||| | ||| Sbjct 139708 TACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTCTCCATG 139767 Query 21487 AAATTAAAAGGATTGCTGGCGTAAAA-ACACCTTTCTTCGTT--CAATTCCA-CGCACAA 21542 || | |||||||||| | ||| | ||||||| ||||| ||| || || || Sbjct 139768 AAGTCAAAAGGATTG--GCCGTCTTATACACCTTC--TCGTTACCAAGAGCAACGAGCAG 139823 Query 21543 ACGATCCGCCACGAATTCAATGTATTGACACATGC-TGTCGCAATTCATGCCCAACAGAT 21601 ||||| ||||| || |||||||| || ||| ||| ||| |||||||||| ||| Sbjct 139824 GCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCA-TTCATGCCCAGTAGAG 139882 Query 21602 CGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGG 21661 | || | || || || | |||||| | |||||| | || || || | || || Sbjct 139883 CACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAATCT 139942 Query 21662 CGTGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGAC 21721 || || || | || | || || | ||| | || || | || | || | Sbjct 139943 GTTGGAT--CATCTGCTTGC----TGGCTCGGTGCTTCAAGTGAGAGT-GCAGCA-AG-C 139993 Query 21722 AAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGAC 21781 | ||||| | |||||||| ||||| || ||||| || ||||||||| ||| ||||||| Sbjct 139994 AGGCAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGAC 140053 Query 21782 CGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCG--Gaaaaaaa 21839 ||||||| || || || || || | | || || | ||||| |||| ||| |||| Sbjct 140054 CGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAA 140113 Query 21840 CACGCCCTCCACAATGGCGAACGCCACCATGCGCCGCGCCAATTTGCTGGA 21890 | || |||||| || || || |||| |||| | || || |||||| Sbjct 140114 TA--CCTTCCACAGCAGCAAAAGCAACCAAGCGCTGGGCGAA---GCTGGA 140159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394053573760