Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq60 134 2e-26
seq203 129 8e-25
>seq60
Length=156840
Score = 134 bits (148), Expect = 2e-26
Identities = 297/442 (67%), Gaps = 10/442 (2%)
Strand=Plus/Plus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| || || |||||||| || ||||| || ||||| || ||||| ||||||| || ||
Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAATCCTAATTCTGAA 39442
|||||||| ||||| ||||| | | ||||| || | ||| || | |
Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTA---CCAAGAGCAACG 139818
Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502
| || | ||| || ||||| || ||||| ||||||| | |||||| || |
Sbjct 139819 AGCAGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGT 139878
Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562
|| | ||| | |||||| || |||||||||| |||||| || || ||||| ||
Sbjct 139879 AGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATA 139938
Query 39563 ATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGG 39620
||| |||| | | || | || | | | ||| || || || |||||||
Sbjct 139939 ATC--TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGG 139996
Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680
| ||||| || | ||||||||| | ||||||||||| || || ||||| || |
Sbjct 139997 CAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 140056
Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740
|||| | |||||||| || ||||| || || | |||||||| || ||||| || |
Sbjct 140057 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 140116
Query 39741 CTTCTACTGCTGCAAATGCAAC 39762
|||| || || ||||| |||||
Sbjct 140117 CTTCCACAGCAGCAAAAGCAAC 140138
Score = 109 bits (120), Expect = 8e-19
Identities = 195/284 (69%), Gaps = 3/284 (1%)
Strand=Plus/Plus
Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946
|| || || ||||| ||| || |||| || |||||||| || ||| ||||| |||
Sbjct 140325 TAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAT 140384
Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006
|||||||| || | || |||| | ||| || || | || | || |||| ||
Sbjct 140385 CCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCACCGCTGAAGCGCTCAACCAAGTTC 140444
Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066
|| || || || || || ||| ||||||||||||| || || || || |||||
Sbjct 140445 TCGTTGACGATGCCGTCGGAAGCAGCAAAAAATGCCAGTATGTGGGAGATGAAGTATTTC 140504
Query 40067 TCATCGGGTGTCAAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123
|| || ||| || |||||||| | | ||||||||| | ||| | |||||
Sbjct 140505 TCGTCATCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTTGACAGATCGATCTCTTCG 140564
Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167
|| ||||| || || ||||| |||||||||||||| | ||| ||
Sbjct 140565 GCCGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 140608
>seq203
Length=54532
Score = 129 bits (142), Expect = 8e-25
Identities = 402/616 (65%), Gaps = 16/616 (3%)
Strand=Plus/Plus
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
||| || |||| || | |||||| |||||| |||||||||| |||||||| || || ||
Sbjct 7060 GATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCTTGTAGAGCATGAA 7119
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470
||| |||| || || |||| | ||| | || || | ||| | | ||| ||
Sbjct 7120 AGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAAT 7179
Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525
|||| || ||| ||| ||||| || | || | |||| || || ||
Sbjct 7180 ---GGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCATAGAGAGCC--TCAAACTCC 7234
Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585
|| || | ||| ||| || || ||||| || || ||||||| | ||| ||||
Sbjct 7235 TCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCA---ATCA 7291
Query 69586 TCATCCTTA---ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCT 69642
| | ||| || || ||||| || |||||||||||||||||||| | || | |||
Sbjct 7292 CCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCA 7351
Query 69643 CTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702
| | || |||||| || || || ||| | ||| || ||||| | | |||
Sbjct 7352 CGAGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAACTCAAACACATCG 7411
Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762
| ||||| || || | || || || | | || ||||| || || || ||||| ||
Sbjct 7412 GCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCA 7471
Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822
| |||||||||||||| || | || | ||||| ||||| | |||||| || | ||
Sbjct 7472 ACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTGCCG 7531
Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882
|| || || | ||| ||| || | ||||||||| | | | || || ||
Sbjct 7532 TTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCAAGCCGATACCA 7591
Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTA 69942
|| ||||| || ||||| | || || || | |||||||| || || || |||||
Sbjct 7592 CCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTG 7651
Query 69943 TCATCTATCATGTTAA 69958
|| || |||||| ||
Sbjct 7652 TCCTCCTTCATGTCAA 7667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686902892584320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |