Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq60 134 2e-26 seq203 129 8e-25 >seq60 Length=156840 Score = 134 bits (148), Expect = 2e-26 Identities = 297/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || |||||||| || ||||| || ||||| || ||||| ||||||| || || Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAATCCTAATTCTGAA 39442 |||||||| ||||| ||||| | | ||||| || | ||| || | | Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACACCTTCTCGTTA---CCAAGAGCAACG 139818 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | || | ||| || ||||| || ||||| ||||||| | |||||| || | Sbjct 139819 AGCAGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGT 139878 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 || | ||| | |||||| || |||||||||| |||||| || || ||||| || Sbjct 139879 AGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATA 139938 Query 39563 ATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGG 39620 ||| |||| | | || | || | | | ||| || || || ||||||| Sbjct 139939 ATC--TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGG 139996 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | ||||| || | ||||||||| | ||||||||||| || || ||||| || | Sbjct 139997 CAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 140056 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740 |||| | |||||||| || ||||| || || | |||||||| || ||||| || | Sbjct 140057 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 140116 Query 39741 CTTCTACTGCTGCAAATGCAAC 39762 |||| || || ||||| ||||| Sbjct 140117 CTTCCACAGCAGCAAAAGCAAC 140138 Score = 109 bits (120), Expect = 8e-19 Identities = 195/284 (69%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || || || ||||| ||| || |||| || |||||||| || ||| ||||| ||| Sbjct 140325 TAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAT 140384 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 |||||||| || | || |||| | ||| || || | || | || |||| || Sbjct 140385 CCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCACCGCTGAAGCGCTCAACCAAGTTC 140444 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 || || || || || || ||| ||||||||||||| || || || || ||||| Sbjct 140445 TCGTTGACGATGCCGTCGGAAGCAGCAAAAAATGCCAGTATGTGGGAGATGAAGTATTTC 140504 Query 40067 TCATCGGGTGTCAAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 || || ||| || |||||||| | | ||||||||| | ||| | ||||| Sbjct 140505 TCGTCATCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTTGACAGATCGATCTCTTCG 140564 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || ||||| || || ||||| |||||||||||||| | ||| || Sbjct 140565 GCCGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 140608 >seq203 Length=54532 Score = 129 bits (142), Expect = 8e-25 Identities = 402/616 (65%), Gaps = 16/616 (3%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || |||| || | |||||| |||||| |||||||||| |||||||| || || || Sbjct 7060 GATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCTTGTAGAGCATGAA 7119 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 ||| |||| || || |||| | ||| | || || | ||| | | ||| || Sbjct 7120 AGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAAT 7179 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525 |||| || ||| ||| ||||| || | || | |||| || || || Sbjct 7180 ---GGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCATAGAGAGCC--TCAAACTCC 7234 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || | ||| ||| || || ||||| || || ||||||| | ||| |||| Sbjct 7235 TCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCA---ATCA 7291 Query 69586 TCATCCTTA---ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCT 69642 | | ||| || || ||||| || |||||||||||||||||||| | || | ||| Sbjct 7292 CCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCA 7351 Query 69643 CTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702 | | || |||||| || || || ||| | ||| || ||||| | | ||| Sbjct 7352 CGAGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAACTCAAACACATCG 7411 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 | ||||| || || | || || || | | || ||||| || || || ||||| || Sbjct 7412 GCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCA 7471 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | |||||||||||||| || | || | ||||| ||||| | |||||| || | || Sbjct 7472 ACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTGCCG 7531 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 || || || | ||| ||| || | ||||||||| | | | || || || Sbjct 7532 TTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCAAGCCGATACCA 7591 Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTA 69942 || ||||| || ||||| | || || || | |||||||| || || || ||||| Sbjct 7592 CCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTG 7651 Query 69943 TCATCTATCATGTTAA 69958 || || |||||| || Sbjct 7652 TCCTCCTTCATGTCAA 7667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902892584320