Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq72 98.7 8e-16 >seq72 Length=138446 Score = 98.7 bits (108), Expect = 8e-16 Identities = 294/449 (65%), Gaps = 21/449 (5%) Strand=Plus/Plus Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATT 19437 |||||||| || ||||| | | || ||||| | |||| | || ||||| || Sbjct 41345 GGAAAAACCTTGATTGCTCGTCAGATTGGTAAAATGCTTAATGCCCGGCCACCCAAGGTT 41404 Query 19438 GTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGT 19497 | |||||||||||| | | || || || || |||||||| ||||| ||| | ||| Sbjct 41405 ATCAATGGTCCTGAAGTACTGAACAAGTACGTGGGTCAATCTGAAGAGAATATCCGAAAG 41464 Query 19498 TTGTTTGCTGACGCTGAAGAAGA--ACAA--AAACGTTTAGGGCG-CAAAAGTTCTTTGC 19552 | ||||| ||||| ||| |||| |||| ||| | |||| ||||| | | | Sbjct 41465 CTATTTGCAGACGCCGAAAAAGAGTACAAGGAAA-----AAGGCGATGAAAGTAGTCTTC 41519 Query 19553 ACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TG 19603 |||| || || | || || |||| || | || || || |||||||| || Sbjct 41520 ACATCATCATCTTTGACGAGCTGGATGCCGTTTGCAAACAGAGAGGTTCGGGAGCCGGTG 41579 Query 19604 GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 | | || ||| || ||||| ||| || || || || || || || | || || ||| Sbjct 41580 GCGGAACTGGCGTCGGTGACAGTGTCGTGAACCAGCTGCTTTCCAAGCTTGATGGCGTTG 41639 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 | || || || || || | | || || ||||| || | || | || ||| | Sbjct 41640 ATCAGCTTAACAACATCCTGCTGATAGGAATGACCAACCGGAAAGACATGATTGACGATG 41699 Query 19724 C-CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 | || || | |||| || || || ||| | | |||||||| | | |||||||| | Sbjct 41700 CGCTCATGA-GACCAGGCCGTTTAGAAGTCCATCTCGAAATTTCCCTGCCCGATGAGCCT 41758 Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811 |||||| | |||||||| || |||||||| Sbjct 41759 GGACGTCTCGAAATTTTCAAGATACATAC 41787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452667331440