Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq203 228 9e-55 seq48 111 2e-19 seq60 91.5 2e-13 >seq203 Length=54532 Score = 228 bits (252), Expect = 9e-55 Identities = 899/1387 (65%), Gaps = 33/1387 (2%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCTGTCTTGG 104285 ||||| | ||||| || || ||||||| |||||| |||| |||| ||| ||| Sbjct 7823 ACATGATTATGCGTGTTGCTGTCGGTATC--TGGGGA-GACAATATTGAGCGAGTCCTGG 7767 Query 104286 AGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAA 104343 | || ||| | |||||| ||| | | | || || || | || || |||||||| Sbjct 7766 AAACCTACCATCTCATGTCCAGCAAACTCTTTACA--CATGCCTCGCCCACACTCTTCAA 7709 Query 104344 TGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTC 104403 ||||| ||||| | || |||| ||||||||| | | || ||||||||| Sbjct 7708 CGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTTGACATGAAGGAGGACAG 7649 Query 104404 AATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGG 104463 ||| | || ||||||| || || | | || || ||||| ||| |||||| || Sbjct 7648 CATCGAAGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGG 7589 Query 104464 TATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGG 104523 ||| || || | |||| | | | |||| | ||| ||| || || || || Sbjct 7588 TATCGGCTTGAATGTCCACCGTATTCGCGCCACTGGCTCTTACATTGCAGGCACCAACGG 7529 Query 104524 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 104583 || ||||| | ||||| |||||||| || || ||| ||| || | ||||| | Sbjct 7528 CACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACTGCCAGATATGTTGA 7469 Query 104584 TCAAGCTGGGCGTCGAAAGGGATCTATCGCAGT--CTAT---CTTG-AGCCATGGCACGC 104637 || | ||| | | ||| || || ||| | | || |||| |||| |||||||| Sbjct 7468 CCAGGGTGG-CAAC--AAGCGACCTGGTGCATTTGCCATTTACTTGGAGCCTTGGCACGC 7412 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697 ||| | | ||||||||||| ||||| ||||| ||| | || || | || || Sbjct 7411 CGATGTGTTTGAGTTCCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAGTCCGAGCTCG 7352 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||| | ||| ||||| |||||||| ||||| ||||||||| | || || ||| || Sbjct 7351 TGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGTGTCGAAAAGAACGG 7292 Query 104758 CAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 ||||| |||| | || || || || || || || || | || | || |||| Sbjct 7291 TGATTGGACTCTGATGTGCCCCAACGAATGCCCC-GGCCTGGCTGACTGCTACGGCGAGG 7233 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG 104876 ||||||| || || || ||||| ||| || || || |||||| | | | Sbjct 7232 AGTTTGAGGCTCTCTATGAGAAGTATGAGCGTGAGGGCAAGGGTCGTGCGACCATTCGTG 7173 Query 104877 CTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 | | || | | ||| | | || || | | || |||||||| |||| || | |||| Sbjct 7172 CC-CAGAAGCTCTGGTACTCCATCCTGGAAGCCCAGACCGAGACGGGTAATCCTTTCATG 7114 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 || ||||| || ||||||||| |||||| ||||| ||||| ||||| ||| || Sbjct 7113 CTCTACAAGGATGCCTGTAACAGAAAGAGCAATCAGAAGAACTTGGGAACAATCCGCAGC 7054 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 ||||| ||||| || ||||| | || | | | | |||||| ||||| || ||| Sbjct 7053 TCCAACCTCTGCACGGAAATTATCGAGTACTCTGCCCCTGATGAGGTCGCTGTATGCAAC 6994 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT-GATTATGA 105114 | || || | ||||| ||| | ||| || | | | | ||| | || | | Sbjct 6993 TTGGCCTCTCTGGCTCTGCCCGCCTTTGTTGA-CTACAACGAGGGACGCTACGACTTCCA 6935 Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174 || || ||||| || ||| | || ||||| |||||| | |||||| || Sbjct 6934 GAAGCTTCACGAGGTCACGCAGGTCGTTGTTCGTAACCTGAACAGAATCATTGATGTCAA 6875 Query 105175 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 105234 |||||||| || || || || || ||| ||||||| || |||||| | || Sbjct 6874 CCACTACCCCGTCCAGGAGGCCCGAAACAGCAACATGCGACACCGACCTATTGGTGTTGG 6815 Query 105235 TGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAG 105293 || ||||||||||| || | ||| || | ||| ||| |||| || || |||| Sbjct 6814 CGTCCAGGGTCTCGCTGACGCTTTCCTTGCCTTG-CGCATGCCATTCGAGTCACCTGAAG 6756 Query 105294 CGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTT 105353 | || |||| || |||||||||||||| ||||| || || || || | Sbjct 6755 CCCGTGAGCTCAACAAGCAGATATTTGAGACCATTTATCATGCTGCCCTCACTGCCTCTC 6696 Query 105354 CAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 105413 || ||||| ||| | || || || | || || |||| ||||| || || | | Sbjct 6695 TCGAATTGGCCAAGGAACAGGGGCCCTACGCCACTTTCAAGGGCTCTCCCGCCTCGGAGG 6636 Query 105414 GGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGA-AG 105470 | | ||||| || || ||||||| | |||| | | || | || || ||||| || Sbjct 6635 GCATCCTTCAGTTCGACATGTGGG-ACGTGA-AGCCTTCTGACCTCTGGGAGTGGGATAG 6578 Query 105471 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGC 105530 | |||||||| | ||||||||| | || |||| ||| | || | || || |||| Sbjct 6577 C-CTCAAGGAGCAGATCAAGGAGCATGGGATTCGCAACTCATTGCTGCTCGCCCCCATGC 6519 Query 105531 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGA 105590 | || || || ||| | || || ||||||| ||||| ||||| || || |||||| | | Sbjct 6518 CTACGGCTTCTACCTCTCAGATTCTGGGTAACAATGAGTGCTTCGAGCCTTACACGTCCA 6459 Query 105591 ACATCTA 105597 |||| || Sbjct 6458 ACATTTA 6452 >seq48 Length=174106 Score = 111 bits (122), Expect = 2e-19 Identities = 185/262 (71%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||| || || |||||||||| |||||| ||| ||| | |||| | | | || || Sbjct 93563 GGCATCTATTTCGTCAATGAAGATGATGCAGGGTGCATTCTTGCGACCCTCGGCGAAAAG 93504 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 ||| || || || | || |||||||||||||| || || || | | || || Sbjct 93503 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACGAATTCGGAACCGCTTAC 93444 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 || | ||| || ||| ||||||||| || ||||| ||| ||||| || || || | Sbjct 93443 GCTGAA-GAACGGAACACCAGATTCACCTGCCGTGGCTTTGGCAAGAAGCGTTTTGCCAG 93385 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9938 ||||||| |||||||||| || || || ||||||||||| || |||| |||| | Sbjct 93384 TACCTGGAGGTCCCGCGAGGATAGCGCCGCGAGGAATCTTGGCCCCTAGCTTCTCAAACT 93325 Query 9939 ATCTCTCAGGTTGCTTAAGAAA 9960 ||||||| || || ||||| Sbjct 93324 ---TCTCAGGCTGTTTGAGAAA 93306 >seq60 Length=156840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAG- 94788 || |||||| || |||| ||||| || || |||||||| ||| || | |||||| Sbjct 140220 AATAGTTCCTTGCATTCGCAAGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGA 140161 Query 94789 -TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 || | ||| || |||| | | || ||||| ||| || ||||| |||||| Sbjct 140160 ATCCAG---CTTCGCCCAGCGCTTGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAG 140104 Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 ||| | || ||| |||| | ||||| |||||||| || | ||||| |||||| || Sbjct 140103 CGGTGCTTT-TGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCT 140045 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||||| | ||||| ||||| ||||| | ||| ||| ||||| Sbjct 140044 TCTCCAACGAATTAATCTCGCGTGATGAGGGCTTGCACACAGACTTTGC 139996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255783957120