Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq203 203 4e-47 seq12 120 3e-22 >seq203 Length=54532 Score = 203 bits (224), Expect = 4e-47 Identities = 357/514 (69%), Gaps = 6/514 (1%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 |||||| || ||| |||| || || ||||||||||| || ||| |||| ||||| Sbjct 7738 CTTTACACATGCCTCGCCCACACTCTTCAACGCTGGCACACCTCAATGTCAGCTGTCGTC 7679 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 |||||||| || | |||||||| ||| ||||| |||||||| || ||||||||| Sbjct 7678 TTGCTTCCTCGTTGACATGAAGGAGGACAGCATCGAAGGCATCTATGACACGCTCAAGAC 7619 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTC--CGT 53449 || ||| ||||||||| | | ||||||||||| | | || || | ||| || Sbjct 7618 CTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA-TG-TCCACCGTATTCGC 7561 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || | ||| | || || || |||||| || |||| || | || ||||| Sbjct 7560 GCCACTGGCTCTTACATTGCAGGCACCAACGGCACGTCCAATGGTGTCATTCCCATGCTT 7501 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 || || ||||||||||| ||| | || || |||||||||| ||||| || | Sbjct 7500 CGTGTTTTCAACAACACTGCCAGATATGTTGACCAGGGTGGCAACAAGCGACCTGGTGCA 7441 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||||| ||| | ||||| ||||||||||| | | ||||| || || |||| | Sbjct 7440 TTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAG 7381 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689 || || ||| | ||||| | || ||||| | || ||||| |||||||| || Sbjct 7380 AACCACGGTAAGGAAGAAGTCCGAGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGAT 7321 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749 || |||||| | || || ||| ||| || ||| ||||||||||| ||||| ||| Sbjct 7320 CTTTTCATGAAGCGTGTCGAAAAGAACGGTGATTGGACTCTGATGTGCCCCAACGAATGC 7261 Query 53750 CCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 |||||||| | | || |||||| ||||||||| Sbjct 7260 CCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTT 7228 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||| |||||||| | ||| ||||||||||| || || ||||| |||| || |||| Sbjct 6241 TGCTGACCGTGGTGCTTTCATTGACCAGTCCCAATCCCTCAACATTCACATGAAGGATCC 6182 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | || ||||||||| || |||||| || ||||||||||| Sbjct 6181 CACCATGGGCAAGATCACTTCCATGCACTTTACTGGCTGGAAGCTAGGTCTCAAGACGGG 6122 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| |||| || Sbjct 6121 CATGTACTACTTGCGCAC 6104 >seq12 Length=329709 Score = 120 bits (132), Expect = 3e-22 Identities = 207/299 (69%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333 ||| || ||||| | ||||||| | ||||||||| | ||||| | || ||||| || Sbjct 292619 GAAAATCTTCTTAGCGAACGGTGCCAAGCGAGTGAAGGTATAACGGGGACTAGCAGCGTC 292560 Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393 ||||||||||||||| | ||| || | ||||| || || || | || | |||||| Sbjct 292559 AGAGCCACCAGCAAGACGAGAACCAAAGTTACCACTTGGTTCTAAAATATTAATGTTGTT 292500 Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453 | || ||||| ||||| |||||| | ||| || ||| || || ||||| || Sbjct 292499 AGATCCAACAAAATTTTGCGCCAAGCCAATAATTGTTTGTTGCAGTGAGGCTTCACCGTG 292440 Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGAC 117511 || || || ||||| || | ||| || || || |||| | | ||||| | || |||| Sbjct 292439 ATGGTATGCAGTCTGTTCAGACACATAACCAGCAAGCTCAACAACCTTTTTATCCTTGAC 292380 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 || |||| ||| | || || || | ||||| ||||||| || |||| ||||| Sbjct 292379 --CAAGTTCCGCTTAAAACAAGCGTAGAGAACCTTTCGCTGACCAGGTTTCAAGCCATC 292323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211293942400