Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq203 203 4e-47
seq12 120 3e-22
>seq203
Length=54532
Score = 203 bits (224), Expect = 4e-47
Identities = 357/514 (69%), Gaps = 6/514 (1%)
Strand=Plus/Minus
Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331
|||||| || ||| |||| || || ||||||||||| || ||| |||| |||||
Sbjct 7738 CTTTACACATGCCTCGCCCACACTCTTCAACGCTGGCACACCTCAATGTCAGCTGTCGTC 7679
Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391
|||||||| || | |||||||| ||| ||||| |||||||| || |||||||||
Sbjct 7678 TTGCTTCCTCGTTGACATGAAGGAGGACAGCATCGAAGGCATCTATGACACGCTCAAGAC 7619
Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTC--CGT 53449
|| ||| ||||||||| | | ||||||||||| | | || || | ||| ||
Sbjct 7618 CTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA-TG-TCCACCGTATTCGC 7561
Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509
|| | ||| | || || || |||||| || |||| || | || |||||
Sbjct 7560 GCCACTGGCTCTTACATTGCAGGCACCAACGGCACGTCCAATGGTGTCATTCCCATGCTT 7501
Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569
|| || ||||||||||| ||| | || || |||||||||| ||||| || |
Sbjct 7500 CGTGTTTTCAACAACACTGCCAGATATGTTGACCAGGGTGGCAACAAGCGACCTGGTGCA 7441
Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629
|| ||||| ||| | ||||| ||||||||||| | | ||||| || || |||| |
Sbjct 7440 TTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAG 7381
Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689
|| || ||| | ||||| | || ||||| | || ||||| |||||||| ||
Sbjct 7380 AACCACGGTAAGGAAGAAGTCCGAGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGAT 7321
Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749
|| |||||| | || || ||| ||| || ||| ||||||||||| ||||| |||
Sbjct 7320 CTTTTCATGAAGCGTGTCGAAAAGAACGGTGATTGGACTCTGATGTGCCCCAACGAATGC 7261
Query 53750 CCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782
|||||||| | | || |||||| |||||||||
Sbjct 7260 CCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTT 7228
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|||||| |||||||| | ||| ||||||||||| || || ||||| |||| || ||||
Sbjct 6241 TGCTGACCGTGGTGCTTTCATTGACCAGTCCCAATCCCTCAACATTCACATGAAGGATCC 6182
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| ||| |||| | | || ||||||||| || |||||| || |||||||||||
Sbjct 6181 CACCATGGGCAAGATCACTTCCATGCACTTTACTGGCTGGAAGCTAGGTCTCAAGACGGG 6122
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| |||| ||
Sbjct 6121 CATGTACTACTTGCGCAC 6104
>seq12
Length=329709
Score = 120 bits (132), Expect = 3e-22
Identities = 207/299 (69%), Gaps = 4/299 (1%)
Strand=Plus/Minus
Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333
||| || ||||| | ||||||| | ||||||||| | ||||| | || ||||| ||
Sbjct 292619 GAAAATCTTCTTAGCGAACGGTGCCAAGCGAGTGAAGGTATAACGGGGACTAGCAGCGTC 292560
Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393
||||||||||||||| | ||| || | ||||| || || || | || | ||||||
Sbjct 292559 AGAGCCACCAGCAAGACGAGAACCAAAGTTACCACTTGGTTCTAAAATATTAATGTTGTT 292500
Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453
| || ||||| ||||| |||||| | ||| || ||| || || ||||| ||
Sbjct 292499 AGATCCAACAAAATTTTGCGCCAAGCCAATAATTGTTTGTTGCAGTGAGGCTTCACCGTG 292440
Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGAC 117511
|| || || ||||| || | ||| || || || |||| | | ||||| | || ||||
Sbjct 292439 ATGGTATGCAGTCTGTTCAGACACATAACCAGCAAGCTCAACAACCTTTTTATCCTTGAC 292380
Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
|| |||| ||| | || || || | ||||| ||||||| || |||| |||||
Sbjct 292379 --CAAGTTCCGCTTAAAACAAGCGTAGAGAACCTTTCGCTGACCAGGTTTCAAGCCATC 292323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547211293942400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |