Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq203 275 7e-69 seq303 190 2e-43 seq245 152 6e-32 seq1 120 3e-22 >seq203 Length=54532 Score = 275 bits (304), Expect = 7e-69 Identities = 1141/1769 (64%), Gaps = 81/1769 (5%) Strand=Plus/Plus Query 80036 GCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCC-GTACAGGTGCATA 80094 |||| |||| |||||||||||||||||||| || ||||||||| ||| || ||||| Sbjct 6102 GCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCTAGCTTCCAGCCAGTAAAG-TGCATG 6160 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 ||| ||| ||| | | ||||| | || |||| ||||| || || || ||||| Sbjct 6161 GAAGTGATCTTGCCCATGGTGGGATCCTTCATGTGAATGTTGAGGGATTGGGACTGGTCA 6220 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTT-CAATAATTGACTTTTGTGGAATTTCCCATAC 80213 |||||||| ||||| || || ||||| | || | || | || | | ||||||||| || Sbjct 6221 ATGAAAGCACCACGGTCAGCAGCCATCTGCACGACGTGTCGTT-GAGAAATTTCCCAAAC 6279 Query 80214 TGTACGATACAC--CTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCG 80271 || || | ||| | | | | ||| | ||| || | | | |||| Sbjct 6280 AGTTTTGTAGAGAGCTTTGATATCGGC-CGGGATATTGGGGATGTT-CTGAATAGAACCG 6337 Query 80272 TCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCT 80328 | || |||| |||| |||| || | ||| | || | | | |||||| Sbjct 6338 TTCTCGGCAATGATACGATTCTTCATCGCATCAGACCAAAGGCCCATGTCGACGAGATCT 6397 Query 80329 TTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 || | || | | ||| || | || | || || || ||| || ||| | || Sbjct 6398 TTGAGTAGCCAGGGATTGACAACCTGGA---ATTCACCTGCCAGGACACGGCGCTGGTAA 6454 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||||||||||| || ||| ||||| || || ||||||| || ||| Sbjct 6455 ATGTTGGACGTGTAAGGCTCGAAGCACTCATTGTTACCCAGAATCTGAGAGGTAGAAGCC 6514 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC---G 80502 || ||||| ||| ||| || || ||| || || | || |||| |||||| | ||| | Sbjct 6515 GTAGGCATGGGGGCGAGCAGCAATGAGTTGCGAATCCCATGCTCCTTGATCTGCTCCTTG 6574 Query 80503 CGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCA 80557 | ||| || || | ||| || ||| | || ||||||||||| ||| | Sbjct 6575 AGGCTATCCCACTCCCAGAGGTCAG----AAGGCT-TCACGTCCCACATGTCGAACTGAA 6629 Query 80558 AGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCA 80617 |||||||||||| || ||||| ||| ||| || |||| || |||| |||||||| Sbjct 6630 GGATGCCCTCCGAGGCGGGAGAGCCCTTGAAAGTGGCGTAGGGCCCCTGTTCCTTGGCCA 6689 Query 80618 GCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACAC 80677 || || | | ||||| || ||||||||| |||||| | |||||| | Sbjct 6690 ATTCGAGAGAGGCAGTGAGGGCAGCATGATAAATGGTCTCAAATATCTGCTTGTTGAGCT 6749 Query 80678 CGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737 | || || | || ||||| | || || || | ||| ||||||| || |||| Sbjct 6750 CACGGGCTTCAGGTGACTCGAATGGCATGCGCAAGGCAAGGAAAGCGTCAGCGAGACCCT 6809 Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC-GGCCTCCGGAATTGGG 80796 | ||||| | | || || ||||| ||| |||| | | || ||||||| | | ||| Sbjct 6810 GGACGCCAACACCAATAGGTCGGTGTCGCATGTT-GCTGTTTCGGGCCTCCTGGACGGGG 6868 Query 80797 TAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGA 80856 || ||| ||| |||| | ||||||||| || ||| ||| | || || || ||| Sbjct 6869 TAGTGGTTGACATCAATGATTCTGTTCAGGTTACGAACAACGACCTGCGTGACCTCGTGA 6928 Query 80857 AGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGAC 80910 || ||||| |||||| | | ||| | ||||| || || || ||| || Sbjct 6929 AGCTTCTGGAAGTCGTAGCGTCCCTCGTTGTAGTCAACAAAGGCGGGCAGAGCCAGAGAG 6988 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 |||| ||||| || || ||||| |||| | | |||||| ||||||||||| | Sbjct 6989 GCCAAGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATTTCCGTGCAGAGG 7048 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || ||||| |||| ||| ||||| || ||| ||| || || |||||| Sbjct 7049 TTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCTTG 7108 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 ||| |||| | || |||| |||||| ||| | | ||||||| || ||| | || Sbjct 7109 TAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCTTC 7168 Query 81091 CGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCG 81150 | || | | || ||||| || | ||||||| | || | || Sbjct 7169 TGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCATAGAGAGCCTCA 7228 Query 81151 AACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA 81209 |||| | |||| | || |||| ||| | ||||| ||||| ||||||||||| ||| Sbjct 7229 AACTCCTCGCCGTAGCAG-TCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCA 7287 Query 81210 GTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAG 81269 || || || || ||| |||||||||| || || ||||| || || ||| | Sbjct 7288 ATCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAA 7347 Query 81270 GTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 || || ||| || | || || | ||| ||||| ||||| || || || || | Sbjct 7348 ATCACG--AGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAACTCAAAC 7405 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGC-GATCGAC-----CCCTTGCGACGGCCA 81381 | || || ||||| ||||||| || | ||| || || | |||| |||| Sbjct 7406 ACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTG---TTGCCA 7462 Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441 ||||||| || || | |||||| ||| || ||||| | ||| || |||| ||||| Sbjct 7463 CCCTGGTCAACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTG 7522 Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGAAA 81499 ||| ||||| || || | || || || ||||||| || || ||| || Sbjct 7523 GACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCAA- 7581 Query 81500 GACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTC 81559 ||||| ||||| | | ||| || ||| || || || | || ||||| || | Sbjct 7582 -GCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGC 7640 Query 81560 CCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGA-AACAGCTTGACATCTGAGG 81611 | |||||||| || | |||||||| |||||||| ||||| |||||| ||||| Sbjct 7641 CTTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGC-TGACAT-TGAGG 7698 Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT----G 81667 || ||| || ||||| ||||| || | || || || | || |||| | Sbjct 7699 ------TGTGCCAGCGTTGAAGAGTGTGGGCGAGGCATG--TGTA--AAGAGTTTGCTGG 7748 Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||| || | ||||||||| ||| || ||||| ||| || ||||||| ||| | Sbjct 7749 ACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATACCGACAGCAA 7808 Query 81728 CACGCATAAACATGTACTGGGGCGTCTCG 81756 ||||||||| ||||| |||||| |||| Sbjct 7809 CACGCATAATCATGTGTTGGGGCCGCTCG 7837 >seq303 Length=27345 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || ||||| || |||||||||||||| || ||||||||||| |||||| Sbjct 10973 ATCATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCA 11032 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | ||| | ||| | ||| | || ||||||||||||||||| || || || || Sbjct 11033 TCTGACACCATCGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGGATCCCCCCCGAT 11092 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || |||||||| || |||||||| ||||| || ||||| | || ||||| |||||||| Sbjct 11093 CAACAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTAC 11152 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || ||||||||||| || | || || || ||||| Sbjct 11153 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGCCTCCGTGGTGG 11202 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || || ||||| ||||| | Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| | || ||||| || ||||| || |||||||| || ||| Sbjct 11553 GACACTATAGACAATGTGAAAACGAAGATTCAAGATAAGGAAGGCATTCCTCCCGATCAG 11612 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||||| || || || |||||||| || Sbjct 11613 CAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTACAAC 11672 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || ||| | ||| | || |||||| | || |||||||| Sbjct 11673 ATCCAGAAGGAGTCAACTTTGCATTTGGTGTTGCGTTTGCGTGGTGGACA 11722 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| | ||||| ||||| || || || ||||| ||||| ||||| ||| | Sbjct 11277 GTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGAC 11336 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || |||| | || ||||| || ||||| || || ||||| |||||||||||||| ||| Sbjct 11337 AACGTGAAAACCAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTGATT 11396 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| || || |||| ||||| || || || || || |||| ||||| Sbjct 11397 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACAACATCCAGAAGGAG 11456 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| || | || ||||| || || Sbjct 11457 TCCACACTTCATCTTGTTCTCCGCCTTCGTGGCGG 11491 >seq245 Length=42083 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || || ||||| ||||| Sbjct 31653 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 31712 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 31713 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 31772 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| |||||||||| || ||||| || ||||| || Sbjct 31773 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAAC 31832 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| || | || |||| || || ||||| Sbjct 31833 ATCCAGAAGGAGAGCACTCTGCACTTGGTGCTGCGCCTGCGTGGTGG 31879 >seq1 Length=703770 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||| ||||| || || || ||||| || || | ||||| ||||| || | || Sbjct 263377 TTTGTGAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 263436 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | || | || |||||||| |||||||| || || || ||||||||||| | Sbjct 263437 GACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 263496 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| || ||||||| || ||||| |||||||| ||| |||| ||| Sbjct 263497 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCAGAAG 263556 Query 27595 G 27595 | Sbjct 263557 G 263557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305495330560