Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq203 275 7e-69
seq303 190 2e-43
seq245 152 6e-32
seq1 120 3e-22
>seq203
Length=54532
Score = 275 bits (304), Expect = 7e-69
Identities = 1141/1769 (64%), Gaps = 81/1769 (5%)
Strand=Plus/Plus
Query 80036 GCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCC-GTACAGGTGCATA 80094
|||| |||| |||||||||||||||||||| || ||||||||| ||| || |||||
Sbjct 6102 GCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCTAGCTTCCAGCCAGTAAAG-TGCATG 6160
Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154
||| ||| ||| | | ||||| | || |||| ||||| || || || |||||
Sbjct 6161 GAAGTGATCTTGCCCATGGTGGGATCCTTCATGTGAATGTTGAGGGATTGGGACTGGTCA 6220
Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTT-CAATAATTGACTTTTGTGGAATTTCCCATAC 80213
|||||||| ||||| || || ||||| | || | || | || | | ||||||||| ||
Sbjct 6221 ATGAAAGCACCACGGTCAGCAGCCATCTGCACGACGTGTCGTT-GAGAAATTTCCCAAAC 6279
Query 80214 TGTACGATACAC--CTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCG 80271
|| || | ||| | | | | ||| | ||| || | | | ||||
Sbjct 6280 AGTTTTGTAGAGAGCTTTGATATCGGC-CGGGATATTGGGGATGTT-CTGAATAGAACCG 6337
Query 80272 TCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCT 80328
| || |||| |||| |||| || | ||| | || | | | ||||||
Sbjct 6338 TTCTCGGCAATGATACGATTCTTCATCGCATCAGACCAAAGGCCCATGTCGACGAGATCT 6397
Query 80329 TTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385
|| | || | | ||| || | || | || || || ||| || ||| | ||
Sbjct 6398 TTGAGTAGCCAGGGATTGACAACCTGGA---ATTCACCTGCCAGGACACGGCGCTGGTAA 6454
Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445
| ||| | ||||||||||| || ||| ||||| || || ||||||| || |||
Sbjct 6455 ATGTTGGACGTGTAAGGCTCGAAGCACTCATTGTTACCCAGAATCTGAGAGGTAGAAGCC 6514
Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC---G 80502
|| ||||| ||| ||| || || ||| || || | || |||| |||||| | ||| |
Sbjct 6515 GTAGGCATGGGGGCGAGCAGCAATGAGTTGCGAATCCCATGCTCCTTGATCTGCTCCTTG 6574
Query 80503 CGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCA 80557
| ||| || || | ||| || ||| | || ||||||||||| ||| |
Sbjct 6575 AGGCTATCCCACTCCCAGAGGTCAG----AAGGCT-TCACGTCCCACATGTCGAACTGAA 6629
Query 80558 AGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCA 80617
|||||||||||| || ||||| ||| ||| || |||| || |||| ||||||||
Sbjct 6630 GGATGCCCTCCGAGGCGGGAGAGCCCTTGAAAGTGGCGTAGGGCCCCTGTTCCTTGGCCA 6689
Query 80618 GCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACAC 80677
|| || | | ||||| || ||||||||| |||||| | |||||| |
Sbjct 6690 ATTCGAGAGAGGCAGTGAGGGCAGCATGATAAATGGTCTCAAATATCTGCTTGTTGAGCT 6749
Query 80678 CGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737
| || || | || ||||| | || || || | ||| ||||||| || ||||
Sbjct 6750 CACGGGCTTCAGGTGACTCGAATGGCATGCGCAAGGCAAGGAAAGCGTCAGCGAGACCCT 6809
Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC-GGCCTCCGGAATTGGG 80796
| ||||| | | || || ||||| ||| |||| | | || ||||||| | | |||
Sbjct 6810 GGACGCCAACACCAATAGGTCGGTGTCGCATGTT-GCTGTTTCGGGCCTCCTGGACGGGG 6868
Query 80797 TAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGA 80856
|| ||| ||| |||| | ||||||||| || ||| ||| | || || || |||
Sbjct 6869 TAGTGGTTGACATCAATGATTCTGTTCAGGTTACGAACAACGACCTGCGTGACCTCGTGA 6928
Query 80857 AGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGAC 80910
|| ||||| |||||| | | ||| | ||||| || || || ||| ||
Sbjct 6929 AGCTTCTGGAAGTCGTAGCGTCCCTCGTTGTAGTCAACAAAGGCGGGCAGAGCCAGAGAG 6988
Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970
|||| ||||| || || ||||| |||| | | |||||| ||||||||||| |
Sbjct 6989 GCCAAGTTGCATACAGCGACCTCATCAGGGGCAGAGTACTCGATAATTTCCGTGCAGAGG 7048
Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030
|| || ||||| |||| ||| ||||| || ||| ||| || || ||||||
Sbjct 7049 TTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGATTGCTCTTTCTGTTACAGGCATCCTTG 7108
Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090
||| |||| | || |||| |||||| ||| | | ||||||| || ||| | ||
Sbjct 7109 TAGAGCATGAAAGGATTACCCGTCTCGGTCTGGGCTTCCAGGATGGAGTACCAGAGCTTC 7168
Query 81091 CGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCG 81150
| || | | || ||||| || | ||||||| | || | ||
Sbjct 7169 TGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTCTCATAGAGAGCCTCA 7228
Query 81151 AACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA 81209
|||| | |||| | || |||| ||| | ||||| ||||| ||||||||||| |||
Sbjct 7229 AACTCCTCGCCGTAGCAG-TCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCA 7287
Query 81210 GTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAG 81269
|| || || || ||| |||||||||| || || ||||| || || ||| |
Sbjct 7288 ATCACCGTTCTTTTCGACACGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAA 7347
Query 81270 GTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327
|| || ||| || | || || | ||| ||||| ||||| || || || || |
Sbjct 7348 ATCACG--AGCTCGGACTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGGAACTCAAAC 7405
Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGC-GATCGAC-----CCCTTGCGACGGCCA 81381
| || || ||||| ||||||| || | ||| || || | |||| ||||
Sbjct 7406 ACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAATGCACCAGGTCGCTTG---TTGCCA 7462
Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441
||||||| || || | |||||| ||| || ||||| | ||| || |||| |||||
Sbjct 7463 CCCTGGTCAACATATCTGGCAGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTG 7522
Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGAAA 81499
||| ||||| || || | || || || ||||||| || || ||| ||
Sbjct 7523 GACGTGCCGTTGGTGCCTGCAATGTAAGAGCCAGTGGCGCGAATACGGTGGACATTCAA- 7581
Query 81500 GACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTC 81559
||||| ||||| | | ||| || ||| || || || | || ||||| || |
Sbjct 7582 -GCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGC 7640
Query 81560 CCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGA-AACAGCTTGACATCTGAGG 81611
| |||||||| || | |||||||| |||||||| ||||| |||||| |||||
Sbjct 7641 CTTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCAAGACGACAGC-TGACAT-TGAGG 7698
Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT----G 81667
|| ||| || ||||| ||||| || | || || || | || |||| |
Sbjct 7699 ------TGTGCCAGCGTTGAAGAGTGTGGGCGAGGCATG--TGTA--AAGAGTTTGCTGG 7748
Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727
|||| || | ||||||||| ||| || ||||| ||| || ||||||| ||| |
Sbjct 7749 ACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATACCGACAGCAA 7808
Query 81728 CACGCATAAACATGTACTGGGGCGTCTCG 81756
||||||||| ||||| |||||| ||||
Sbjct 7809 CACGCATAATCATGTGTTGGGGCCGCTCG 7837
>seq303
Length=27345
Score = 190 bits (210), Expect = 2e-43
Identities = 180/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| |||||||| || ||||| || |||||||||||||| || ||||||||||| ||||||
Sbjct 10973 ATCATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCA 11032
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
||| | ||| | ||| | ||| | || ||||||||||||||||| || || || ||
Sbjct 11033 TCTGACACCATCGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGGATCCCCCCCGAT 11092
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|| |||||||| || |||||||| ||||| || ||||| | || ||||| ||||||||
Sbjct 11093 CAACAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTAC 11152
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | || ||||| || ||||||||||| || | || || || |||||
Sbjct 11153 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGCCTCCGTGGTGG 11202
Score = 167 bits (184), Expect = 3e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || ||||| || || || ||||| ||||| |
Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| |||| | || ||||| || ||||| || |||||||| || |||
Sbjct 11553 GACACTATAGACAATGTGAAAACGAAGATTCAAGATAAGGAAGGCATTCCTCCCGATCAG 11612
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| |||||||||| || || || |||||||| ||
Sbjct 11613 CAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTACAAC 11672
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || ||| | ||| | || |||||| | || ||||||||
Sbjct 11673 ATCCAGAAGGAGTCAACTTTGCATTTGGTGTTGCGTTTGCGTGGTGGACA 11722
Score = 154 bits (170), Expect = 2e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| | ||||| ||||| || || || ||||| ||||| ||||| ||| |
Sbjct 11277 GTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGAC 11336
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| |||| | || ||||| || ||||| || || ||||| |||||||||||||| |||
Sbjct 11337 AACGTGAAAACCAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTGATT 11396
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| ||||||||||| || || |||| ||||| || || || || || |||| |||||
Sbjct 11397 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACAACATCCAGAAGGAG 11456
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| |||||||| || | || ||||| || ||
Sbjct 11457 TCCACACTTCATCTTGTTCTCCGCCTTCGTGGCGG 11491
>seq245
Length=42083
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || || ||||| |||||
Sbjct 31653 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 31712
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| ||||| || ||||||
Sbjct 31713 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 31772
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || |||||||| ||||| |||||||||| || ||||| || ||||| ||
Sbjct 31773 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAAC 31832
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||| || | || |||| || || |||||
Sbjct 31833 ATCCAGAAGGAGAGCACTCTGCACTTGGTGCTGCGCCTGCGTGGTGG 31879
>seq1
Length=703770
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
||||| ||||| || || || ||||| || || | ||||| ||||| || | ||
Sbjct 263377 TTTGTGAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 263436
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | || | || |||||||| |||||||| || || || ||||||||||| |
Sbjct 263437 GACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 263496
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| |||||||| ||||| || ||||||| || ||||| |||||||| ||| |||| |||
Sbjct 263497 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCAGAAG 263556
Query 27595 G 27595
|
Sbjct 263557 G 263557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570305495330560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |