Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq245 102 5e-17 seq303 84.2 1e-11 >seq245 Length=42083 Score = 102 bits (112), Expect = 5e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||||| || |||||||||||||| || ||||| || || | || || || Sbjct 31870 AGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 31811 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| |||||||| || | |||||| Sbjct 31810 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCC 31751 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| |||||| || | ||| Sbjct 31750 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGT 31692 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || | || || || ||||||||||| ||| Sbjct 31691 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 31649 >seq303 Length=27345 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | ||| ||||| |||||| |||||||| || |||| || || || Sbjct 11193 AGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGG 11134 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || ||||| || | ||||||||| || || || | |||||| Sbjct 11133 CCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCC 11074 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || || || || | || ||||| ||| || || | || Sbjct 11073 TTGTC-CTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGT 11015 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | ||||| || ||||| |||||| Sbjct 11014 GATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCATG 10975 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||||||||||||| | ||| |||||| || ||||| || |||| |||||| || | Sbjct 11708 ACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCC 11649 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || || || || || || || || | |||||| || || || || | || ||||| Sbjct 11648 ATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTT 11589 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||| || ||||| || | || ||||| |||||| || | ||| | Sbjct 11588 ATCT-TGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTGA 11530 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || | || || || || |||||||| Sbjct 11529 TGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726960992304