Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq245 102 5e-17
seq303 84.2 1e-11
>seq245
Length=42083
Score = 102 bits (112), Expect = 5e-17
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| || |||||||||||||| || ||||| || || | || || ||
Sbjct 31870 AGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 31811
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || ||||| || | ||||| |||||||| || | ||||||
Sbjct 31810 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCC 31751
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || ||||| |||||| || | |||
Sbjct 31750 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGT 31692
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| || || || | || || || ||||||||||| |||
Sbjct 31691 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 31649
>seq303
Length=27345
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||| | ||| ||||| |||||| |||||||| || |||| || || ||
Sbjct 11193 AGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGG 11134
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || || ||||| || | ||||||||| || || || | ||||||
Sbjct 11133 CCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCC 11074
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || || || || | || ||||| ||| || || | ||
Sbjct 11073 TTGTC-CTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGT 11015
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| | ||||| || ||||| ||||||
Sbjct 11014 GATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCATG 10975
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550
||||||||||||||| | ||| |||||| || ||||| || |||| |||||| || |
Sbjct 11708 ACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCC 11649
Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610
|| || || || || || || || || | |||||| || || || || | || |||||
Sbjct 11648 ATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTT 11589
Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669
||| ||| || ||||| || | || ||||| |||||| || | ||| |
Sbjct 11588 ATCT-TGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTGA 11530
Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || | || || || || ||||||||
Sbjct 11529 TGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314726960992304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |