Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq303 134 1e-26 >seq303 Length=27345 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || || ||||| |||| Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || |||||||| || |||||||| || |||||||| Sbjct 11553 GACACTATAGACAATGTGAAAACGAAGATTCAAGATAAGGAAGGCATTCCTCCCGATCAG 11612 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || || | ||| || | || |||||| Sbjct 11613 CAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTACAAC 11672 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| || || |||||||| ||||||||||| ||||| Sbjct 11673 ATCCAGAAGGAGTCAACTTTGCATTTGGTGTTGCGTTTGCGTGGTGG 11719 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || ||||||||| | || |||||||| || || | || Sbjct 10975 CATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATC 11034 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || ||||| ||||| || || || || |||||||| Sbjct 11035 TGACACCATCGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGGATCCCCCCCGATCA 11094 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | || || || || | || ||| | ||| | | || ||||| Sbjct 11095 ACAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAA 11154 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | ||| | || | || | || ||||| || Sbjct 11155 CATTCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGCCTCCGTGGTGGTAT 11205 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || ||| ||||||| ||| | || || || || ||||| | || || | || || Sbjct 11277 GTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGAC 11336 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || ||| || |||||||| || |||||||| || ||||| || |||||| | || Sbjct 11337 AACGTGAAAACCAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTGATT 11396 Query 27120 TACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 | ||| || || || ||||||| | || || || ||||||||||||| || ||| Sbjct 11397 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCG---CCGATTACAACATCCAGAAG 11453 Query 27177 GAGTCGACCTTACATTTGGTT 27197 ||||| || | ||| | ||| Sbjct 11454 GAGTCCACACTTCATCTTGTT 11474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914659701760