Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq303 176 1e-38
seq245 172 1e-37
seq1 120 7e-22
>seq303
Length=27345
Score = 176 bits (194), Expect = 1e-38
Identities = 165/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || ||||| ||||| |||||||| || |||||||| ||||| || || ||
Sbjct 11486 ACGAAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGT 11427
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||||||||||||||| || ||||| || || || || ||||| ||||| | ||
Sbjct 11426 ACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCC 11367
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| || || ||||| ||||||||| |||||||| ||||| || ||||||||
Sbjct 11366 TTCCTTATCTTGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACCTCGAG 11307
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| |||||||| || | |||||| ||
Sbjct 11306 GGTGATGGTCTTTCCGGTCAAAGTCTTGAC 11277
Score = 163 bits (180), Expect = 7e-35
Identities = 155/198 (78%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976
||| ||||| || |||||||| || || ||||| |||| ||||| || |||||||| ||
Sbjct 11690 AGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCC 11631
Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036
||||||||||| || || || || ||||||| |||||||| || || ||||| |||
Sbjct 11630 AGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGAATCTTCGTTTT 11571
Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096
||| || || || |||||||| || |||||||| ||||| |||||||| ||||| ||
Sbjct 11570 CACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGT 11511
Query 211097 CTTTACAAACACCTGCAT 211114
||| || || | ||||||
Sbjct 11510 CTTGACGAAGATCTGCAT 11493
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| |||||||| ||||| || || ||||| || || || ||||| | || ||
Sbjct 11187 AGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 11128
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| || || ||||| || || || | || |||||||||
Sbjct 11127 TCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCC 11068
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || |||||||||||||| || ||||| |||||||| |||
Sbjct 11067 TGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 11008
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || || || || || | |||||
Sbjct 11007 TTGCCGGTAAGGGTTTTGACGAAAATTTGCAT 10976
>seq245
Length=42083
Score = 172 bits (190), Expect = 1e-37
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| |||||| ||| || |||||||| || || || ||||| | |||||
Sbjct 31864 AGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 31805
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || ||||| || |||| || |||||||||
Sbjct 31804 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 31745
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || |||||||| |||||||||
Sbjct 31744 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 31685
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 31684 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31650
>seq1
Length=703770
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| ||||| || || || || ||||| | ||||| || ||||||||||| || |||||
Sbjct 263555 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 263496
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || |||||||| || | || ||||| ||||| ||||| ||| || || |||
Sbjct 263495 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCG 263436
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| | ||||| ||||| ||||| || ||||| |||||
Sbjct 263435 ATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACAAA 263377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159141782075120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |