Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq245 111 1e-19 seq303 82.4 7e-11 >seq245 Length=42083 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || |||||||| || || || || || ||||| || || || | Sbjct 31868 GCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 31809 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 31808 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTT 31749 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || |||| ||| | | | || ||| |||||||| || | |||| Sbjct 31748 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 31690 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||| || || || || || || |||||||| Sbjct 31689 TCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31650 >seq303 Length=27345 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 || || ||||||||||| | || ||| || || || || || || |||||||| || Sbjct 11710 AAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGG 11651 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 | || || ||||| || || || || |||||||||||||| |||| || | || || Sbjct 11650 CCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCC 11591 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 || || || ||| ||| | | | | || || ||||||||| || | ||| Sbjct 11590 TTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTG 11531 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| || || || || || ||||| ||||| Sbjct 11530 ATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541998260144