Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq303 102 6e-17 seq245 93.3 3e-14 >seq303 Length=27345 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||||| || || || || |||||||| || || || || | Sbjct 10976 ATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 11035 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || | || ||||| || || | || || ||||| Sbjct 11036 GACACCATCGACAATGTCAAGACCAAGA-TTCAGGACAAGGAGGGGATCCCCCCCGATCA 11094 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || || || || || |||| ||||| | | || ||||| Sbjct 11095 ACAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAA 11154 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 11155 CATTCAGAAGGAGTCTAC 11172 >seq245 Length=42083 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 23597 ATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCG 23656 |||| ||| || |||||||||||||| || ||||||||||| || |||||||| |||| Sbjct 31639 ATTAGTTAGGCAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCG 31698 Query 23657 AAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTG 23716 | || || || | ||||| | || | | || || || ||||| || || Sbjct 31699 AGGTGGAGTCTTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCA 31758 Query 23717 TACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTT 23776 | || || || || ||||| | || ||||| ||||| || || || || | ||||| Sbjct 31759 TTCCCCCGGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCC 31818 Query 23777 TAGGCGATTACAACATACAAAAAGAG 23802 | | ||| |||||||| || || ||| Sbjct 31819 TGGCCGACTACAACATCCAGAAGGAG 31844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006765789504