Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq60 109 5e-19 >seq60 Length=156840 Score = 109 bits (120), Expect = 5e-19 Identities = 195/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 ||||| | || ||||| |||| || || |||| || || || || || || | Sbjct 140318 CTTGA-TGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATGA 140376 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 |||| |||||||||||||| | ||| || | ||||| ||||| | || | || | Sbjct 140377 TCTGGAATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCACCGCTGAAGCGCTCAA 140436 Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 | ||||| ||||| || || ||||| || |||||||| |||| | || || || | Sbjct 140437 CCAAGTTCTCGTTGACGATGCCGTCGGAAGCAGCAAAAAATGCCAGTATGTGGGAGATGA 140496 Query 4993 AGTACTGTTCGTCAGGCTT---AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 |||| | |||||| || | | || ||||||| | |||||||||| | | ||| | Sbjct 140497 AGTATTTCTCGTCATCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTTGACAGATCGA 140556 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||||| | ||||| || || || || || ||||||||||| Sbjct 140557 TCTCTTCGGCCGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 140599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046019189104